Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00564 ATGGCGACGGCGGCGGAGCCCGAAGCGAAGACCTACTGGTGCCACGAATGCGACATGAGCGTGTCCCTCACGCTCCCTCCCTCGCCTCTCCTCTGCCCGCACTGCCACACCCACTTCCTCGAACTCATGGACTCTCCCTTCTCCCAAAACGACGCCGAATCACCGCTCTTCGACGTCCTCTTCCAGGACGCGCTCTTGCTGCTCTCCCCCAAGCCCCTTCCCACCAAACCCCGCCCTCTCCCCTCCGTCCACGTCACCCCCTCGCTCCTCTCCGCGCTCGACCCCAGCGGCGTCGTTTTCTGCGCCGTCTGCAAAGACCAAATTGCCCTCGACGCCGACGCCAAACAGTTACCCTGCAAACACCTCTACCACGCCGACTGCATCACGCCGTGGCTCGAGCTCCACGCCTCGTGCCCGCTGTGCAGGCTCCGCCTGGAGGAAGAAGCGGCGGAGGAGGAGGAAGAGGAGGGTGACGGCGTGGTCACGGAGATCCGGCGGGAGCTGATCGCGAGGCTGGCGGAGTTGACGGAGGAGGATTTCTACGGGCTGAGGACCACGCTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACGAGAACCGCCCGCAAATTGGCGAACCTCGAGGTATATAG 639 0.6448 MATAAEPEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPFSQNDAESPLFDVLFQDALLLLSPKPLPTKPRPLPSVHVTPSLLSALDPSGVVFCAVCKDQIALDADAKQLPCKHLYHADCITPWLELHASCPLCRLRLEEEAAEEEEEEGDGVVTEIRRELIARLAELTEEDFYGLRTTLSHIASRHALIEENENRPQIGEPRGI* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00564 212 SMART ring_2 101 141 IPR001841 -
Phac5g00564 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 77 144 - -
Phac5g00564 212 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Phac5g00564 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 160 IPR013083 -
Phac5g00564 212 Pfam Ring finger domain 101 142 IPR001841 -
Phac5g00564 212 ProSiteProfiles Zinc finger RING-type profile. 101 142 IPR001841 -
Phac5g00564 212 SUPERFAMILY RING/U-box 96 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00564 Phac-Chr5 4438133 4441041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00564 5 63 C3H Transcription Factor Family AT3G60080 47.692 1.51e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00564 K11982 - gmx:100775530 298.516