Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00550 ATGCCAACTTTGATTTCATCTAGGTTTCTTTTGCTTGTTGGGGAGTCACTCCACTTGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTGAAGTGTATGAGCCAGGTGGAACCTACTCATGGTTCCCTCACCCTCTCTAGCATAGGTTTCCAAACTAAAACTGAAGCTGGGAATAGAAGCACATCTAATAAGGTTAAGCCATTTGGTTCACCCTCTCAGAATCTCAAGAGCAAAGGAAAACCCTTTCACATTAATGAGAAGAAGAAGAAAGCAGTTAGGGTTGTAGAAAAACAGCAAATAGAGTTTGCCCCTTTTGCTGCAAAGTCATTTCCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGACTAGAGAAGGAGGGTTTTACTATTCCAACTGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTAAACAACCGCGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACACTAGCTTATCTGCTTCCTATTCTCTCGGTTGTTGGACCGCTGAGGGGGAAAGGTGATGATGATGGTGATGAGAATGGGAAGAACTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAAGAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCCAACCGAACCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCAATTGTTGTTGGCACACCTGGTAGGATAGCAGAGCTAAGTGCATCCGGGAAACTTCGCACTCATGGATGTCGATATTTGGTATTAGATGAAGTTGATGAACTCTTGTCGTTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAAATCAAGTGCAGACCCAATCTCAAATGCTGGAAAGAGTGAGCGTCAGTTAATCATGGTTTCTGCAACTGTGCCCTTTTCTGTTGTAAGGGCAGCTAGAAGCTGGGGTTGTGACCCTCTTCTTGTGCAAGCTAAGAAAATTGTCCCGCTTGAAACTGTCTCTCCCTCCGAGCCTGTCAGTTTATCCCGGTCTTCTTTGCCCAGCTCGTCTGTGCCATCTCAAGCAGCGATAGAGAGTCTGCCTCCTGCGCTGAAACACTATTACTGTGTAACAAGGTTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAACAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCAGTGGAGTTACATGGGGATCTAGGGAAGCTTGCGAGGTCAACAACCCTGAAGAAATTCAAGAACGGTGAGGTGAGAGTTCTGGTGACAAATGAATTGTCAGCAAGGGGCTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTCGACTTACCAACAGATTCAATTCATTATGCGCACCGGGCTGGCCGAACTGGACGGCTTGGTAGGAATGGTACAGTGCTAACCATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAGTTGAAGAAGCAGCTGGGAATACCAATTACGTCCTGTGATTTTTCAGAGGGGAAACTACTTGTCACTGAAGAAGAGGAAACAGTTAGCACTTCTAGCATCACAGAAAATTACTCCTCTGGTGAGCAGAAGATAAGTGATGAGAATAGCAAGAACAAAAGAAGAGAATTATGTTGCACTGTGATTGAGATTGTCCACCGTTTTCTGGTTTCTCTTTGGCTGAATTTCGCTCATCTCTGA 1806 0.4535 MPTLISSRFLLLVGESLHLRRALATSRSVLLHTSVKCMSQVEPTHGSLTLSSIGFQTKTEAGNRSTSNKVKPFGSPSQNLKSKGKPFHINEKKKKAVRVVEKQQIEFAPFAAKSFPELGLPHVLIERLEKEGFTIPTEVQSAAVPTILNNRDVIIQSYTGSGKTLAYLLPILSVVGPLRGKGDDDGDENGKNLGIEAVIVAPSRELGMQIVREFEKVLGMDKKRVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRKSSADPISNAGKSERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKIVPLETVSPSEPVSLSRSSLPSSSVPSQAAIESLPPALKHYYCVTRLQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAVELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLKKQLGIPITSCDFSEGKLLVTEEEETVSTSSITENYSSGEQKISDENSKNKRRELCCTVIEIVHRFLVSLWLNFAHL* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00550 601 SMART helicmild6 423 504 IPR001650 -
Phac5g00550 601 Gene3D - 78 344 IPR027417 -
Phac5g00550 601 SMART ultradead3 132 362 IPR014001 -
Phac5g00550 601 Pfam Helicase conserved C-terminal domain 401 504 IPR001650 -
Phac5g00550 601 MobiDBLite consensus disorder prediction 59 84 - -
Phac5g00550 601 Gene3D - 384 586 IPR027417 -
Phac5g00550 601 CDD SF2_C_DEAD 384 513 - -
Phac5g00550 601 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 29 547 - -
Phac5g00550 601 MobiDBLite consensus disorder prediction 59 85 - -
Phac5g00550 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 543 IPR001650 -
Phac5g00550 601 Pfam DEAD/DEAH box helicase 137 328 IPR011545 GO:0003676|GO:0005524
Phac5g00550 601 CDD DEADc 124 343 - -
Phac5g00550 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 342 IPR014001 -
Phac5g00550 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Phac5g00550 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 525 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00550 Phac-Chr5 4359220 4363698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00550 114 532 Eukaryotic Initiation Factors Gene Family AT3G19760 24.105 7.07e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00550 - - gmx:100812968 917.531