Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00538 ATGGATGTTGATTTGAATCAACAGCATCATTTGGATGGGATAGAAGAGCGTTTCAGAAGCCTAGAAGCTGTAGCTTTTAGGGCTAGGCAACACCAGAGGCAACGACTGAGTCATGCTCCCATTCAAATAGTTAACCCTGCAGGAGAAGTGGTAACAATTGCTCATCTTCAAGATGAAGAGGTTGGTGTTGATGATGTTGGAGAGATGATAGGAGATGGGAGAAAGGAAAAGAGAAGGGCTAGTTATTTGGTTGCTAAAGCATTGGGGGTGAAAACCAATGAAGGGGAGGGTTTTGCTGCAAAGTTGTTTCACTGTAATATCTGCTTGAAGAGGGCAAAGGATCCTGTTTTGACTTGTTGTGGTCACTTGTTTTGTTGGCCTTGCTTTCTTAACTTGCCATATGCTTATTTTAAGGTAAAGGAATGTCCTGTTTGTAAAGGAGAGGTCACAAATGAAAGTCTTATCACAATTTATGGCTATTCAAATGTCCACAACAACAGTGGCAAGTTGAGATTTGATGAACCCAATTATGAAATTCCTTCCAAACCCCGTTCAAAGAGGGTTGAGAGCACTAGGCAGCGATTCAGAAATTGA 594 0.4158 MDVDLNQQHHLDGIEERFRSLEAVAFRARQHQRQRLSHAPIQIVNPAGEVVTIAHLQDEEVGVDDVGEMIGDGRKEKRRASYLVAKALGVKTNEGEGFAAKLFHCNICLKRAKDPVLTCCGHLFCWPCFLNLPYAYFKVKECPVCKGEVTNESLITIYGYSNVHNNSGKLRFDEPNYEIPSKPRSKRVESTRQRFRN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00538 197 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Phac5g00538 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 78 193 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac5g00538 197 Pfam zinc-RING finger domain 104 146 IPR001841 -
Phac5g00538 197 SMART ring_2 105 145 IPR001841 -
Phac5g00538 197 SUPERFAMILY RING/U-box 101 163 - -
Phac5g00538 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 194 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00538 Phac-Chr5 4245554 4246975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00538 97 196 C3H Transcription Factor Family AT3G58030 43.689 1.32e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00538 - - gmx:100780540 247.669