Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00537 ATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGCCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACCGGGGTTAGGCTTCACCACCGCTTTGTCAATTGGGCCAGTCATCACTAGACAAAAGGATCAACAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAGAAGATACAAAGCCAAGGAACAACAACAACATCAACACTCACACAACAGAAGATCCTTCCAAACCCAACAACAACAACCCAGTTCTGCATCAGCTTGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTGTCATCTGAGTTGGGAGGTTCTTCTAAGGGCTTGGACGTGAACGCGCAGCCGCCGCTGGCGGAGGATGAGGCGGAGGAAGTGGCGGCGCTGTCATCATCTCCTAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGAACAAAGGGCCTCTTCAAGAGCCAGTGATGAAGATGATAACAACGGTAGTGGCGGCAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACGCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGACAAGTAGAAGTGTGGTTTCAAAACCGAAGGGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACCCTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCCTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGAGTGGCCACAAATTCCACATCCACTTCCTCCTCTCTCAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAACCAGTGGTAGTAACAATGACTCACCCTCCAAAACCATGGGATTCCCATTTGGCAAACCCAGGTTTCATCCATTTGTTCACACTAGCCAACAACCCCATCAACACCAATCCCCATCATCTTGA 1140 0.4684 MELGLSLGDSSRPLLAFMEKPREASNQPGLGFTTALSIGPVITRQKDQQDEQEEFEEEEEEDTKPRNNNNINTHTTEDPSKPNNNNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSKGLDVNAQPPLAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYEQRASSRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSLSAPNATINANSGAMTIVKTSGSNNDSPSKTMGFPFGKPRFHPFVHTSQQPHQHQSPSS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00537 379 SMART HOX_1 195 257 IPR001356 GO:0003677
Phac5g00537 379 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 64 325 - -
Phac5g00537 379 MobiDBLite consensus disorder prediction 21 89 - -
Phac5g00537 379 MobiDBLite consensus disorder prediction 357 379 - -
Phac5g00537 379 ProSitePatterns 'Homeobox' domain signature. 228 251 IPR017970 GO:0000981|GO:0006355
Phac5g00537 379 MobiDBLite consensus disorder prediction 106 120 - -
Phac5g00537 379 MobiDBLite consensus disorder prediction 105 147 - -
Phac5g00537 379 CDD homeodomain 197 254 IPR001356 GO:0003677
Phac5g00537 379 MobiDBLite consensus disorder prediction 177 201 - -
Phac5g00537 379 Pfam Homeobox associated leucine zipper 253 287 IPR003106 GO:0006355|GO:0043565
Phac5g00537 379 SMART halz 253 296 IPR003106 GO:0006355|GO:0043565
Phac5g00537 379 MobiDBLite consensus disorder prediction 68 89 - -
Phac5g00537 379 Coils Coil 266 289 - -
Phac5g00537 379 MobiDBLite consensus disorder prediction 27 45 - -
Phac5g00537 379 SUPERFAMILY Homeodomain-like 184 254 IPR009057 -
Phac5g00537 379 FunFam Homeobox-leucine zipper protein 18 180 258 - -
Phac5g00537 379 ProSiteProfiles 'Homeobox' domain profile. 193 253 IPR001356 GO:0003677
Phac5g00537 379 Pfam Homeodomain 197 251 IPR001356 GO:0003677
Phac5g00537 379 Gene3D - 201 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00537 Phac-Chr5 4212659 4215365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00537 120 309 Homeobox Transcription Factor Family AT3G60390 59.091 4.90e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac5g00537 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00537 K09338 - gmx:100778742 511.531