Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00515 ATGGCTTCTCTTCACTCTTCTCTTCTCTTGCCTCCAAATCTCCTTTCCCTCACTACCCCTTCAACTTCCCCTTCACACATTCTCTTCAACCTCAGACCCTCCACCACCCACTTGCGACCCCTTTCCACCACACAGCGCCACCGTTTTGGGAGACCCTTCGTGGTGGCTGAGCAGGCCACGGTGACGGAGGCCGCGAGGAGGCTCTACGTCGGCAACATTCCTCGCACTGTCAACAACGATGAGCTCTCCAAGATTGTTCAGGAACATGGCGCTATTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGATTTGCATTTGTTACAATGAAAACTGTTGAGGATGCAAATGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATCAAAGTAAATGTTACCGAAAAACCTTTATCAACATCAGATTTGCCTTTATCCCAATCTGAGGAATCTCAATTTATTGACAGTCCCAACAAGGTGTATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAAGTTTTTTTCTGAGAAGGGAAAAGTTCTGAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACTTTTTCATCAGAAGATGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTTCATTAGAAGGGCAAAAAATCCGAGTGAACAAGGCATAG 729 0.454 MASLHSSLLLPPNLLSLTTPSTSPSHILFNLRPSTTHLRPLSTTQRHRFGRPFVVAEQATVTEAARRLYVGNIPRTVNNDELSKIVQEHGAIEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNVTEKPLSTSDLPLSQSEESQFIDSPNKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEDDVEAAISSFNNSSLEGQKIRVNKA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00515 242 Gene3D - 152 242 IPR012677 -
Phac5g00515 242 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Phac5g00515 242 CDD RRM1_PSRP2_like 67 146 - -
Phac5g00515 242 Gene3D - 54 151 IPR012677 -
Phac5g00515 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Phac5g00515 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 242 IPR000504 GO:0003723
Phac5g00515 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 138 IPR000504 GO:0003723
Phac5g00515 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 238 IPR000504 GO:0003723
Phac5g00515 242 SUPERFAMILY RNA-binding domain, RBD 155 242 IPR035979 GO:0003676
Phac5g00515 242 SMART rrm1_1 167 240 IPR000504 GO:0003723
Phac5g00515 242 SMART rrm1_1 67 140 IPR000504 GO:0003723
Phac5g00515 242 FunFam 30S ribosomal protein 2, chloroplastic 153 242 - -
Phac5g00515 242 PANTHER OS02G0815200 PROTEIN 63 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00515 Phac-Chr5 4044583 4048088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00515 68 242 Eukaryotic Initiation Factors Gene Family AT2G23350 32.000 1.40e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00515 K13126 - gmx:100811197 367.851