LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g00501	ATGGCTGTGCCATCATTCTCCTCTTCCTTCACCTACGACGTCTTCCTCAGCTTCAGAGGAGAAGATACTCGTTACGGTTTCACCGGCAATCTCTATACAGCCCTTCATGACAGCGGAATTTACACCTTCATCGATGACGAGGAGCTCCCCAAAGGAGACGAAATCACCACCTCACTACAGAAGGCAATCGAAGGTTCCAGAATTTTCATCATCGTTTTCTCTCACAACTACGCATCTTCTTCCTTTTGCTTGAACGAGCTCGCCTACATTCTTCCCTACGCTAAGAGAAATGGTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGACACCACACGGGTACCTTTGGAGAAGCGTTAGATACTCATGAAAACAAGTTCAAAGGTACGAGTGAGGGTTTTGAGCTTAACATGGAGAAGCTCAACAGATGGAAGATGGCTCTGCGTGGAGCTGCTAACTTATCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACCAGTTTATCAAGAGGATAGTGAAATTGGTCTCTAACAAGATTAACCGTGCTCCTTTACATGTTGCGGATTATCCAGTTGGACTAGAGACACGAATGCTAGAAGTAAAGTTGCTTCTAGATGTAGGATCTGATGATGGTGTCCACATGGTAGGGATCCATGGATTCGGTGGAGTTGGTAAAACCACACTTGCTCTTGCAGTTTACAACTCCATAGCTGACAATTTTGAAGGCTTGTGTTTCCTTGAAAATGTGAGAGAGAATTCAAACAAACACGGCCTACAACATCTTCAGAGCCTCCTTCTTTCTCAAATGGTTGGAGAAAATAATATCAACATAACTAGTGTGAAACAAGGGATTTCAATGATGCAGCATAGGCTACGGCAGAAGAAGATTCTTTTGATTCTTGATGATGTTGACAAGCATGAACAGTTACAAGCAATTGTTGGAAGAGCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACTAGGGACAAACATTTGTTGTCATGTCAGTTGGTTGAAAAAATATATGAAGTGAAGAAGTTGAAAAAGAAAGATGCTCTTCGACTGCTTAGTTGGAAAGGTTTTAAAACAGAAGAAGTTCATCCAAGTTATGTGAATGTCATGGGTCGTGTACTGGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATAGGTTCGAAGTTGTTTAGAAAAAGTGTAAAAGAATGGGAATCTGCCATCCACCAGTATCAGAAAATTCCTAACAATCAAATCCTGGAGATGCTTAAAATAAGTTTTGATTCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGATATGCATTGTCAGAGGTGGAAAATATACTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAATATAGATGGAATTCTGTAGTTACATTGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGACAGAAATCACCAAATAAGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAACTCGGGAAGTGGAGAAATTGAAATCATATGTTTGAATTACTCTTTACCTGACAAAGAAGAAATAGTAGAATGGAACAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATTATTAAAAGTGGTAATTTTTCGGAAGGTCCTAAATATCTTCCAAACAGTTTAAGAGTAATGGAATGGTTAAAATATCCTTCACAAGGGCTACCGCCAGATTTTCGTTCAAAGGAACTTGCCATATGCAAATTACCTGCAAGTTGTTTTGGGTCACTCGAATTGGCCGAGTTATCAAAGAAGTTCATGAATATGACCCTTTTGAATTTTGACGAATGTGAAGGTTTAACACAGATACCTGATGTATCTGGGCTGCCAAATTTAGTAGAAATTTCATTCAAGAATTGTAAGAGTTTAATTACAATCCATGACTCCATTGGGCTCCTAGGTAAGCTTAACTCCTTGAATGCTGTTGGTTGCAGCAAGCTTAGGAGTTTTCCACCCCTCAAATTGACTTCTCTGGAAAATCTTGAACTTTCATATTGTTACAGTCTTGAGAGCTTCCCAGAAATATTAGGGAAAATGGGAAAGATAACAGAACTTTTCTTGGAGTGCTGTGACATAAAAGAATTGCCATTTTCATTTCAAAATCTCACTGAGCTTCAAACATTACAGTTGCGTTACTGTCCCATGTTAAGGTTGCCAAGTAGTATTGTCATGATGCCAAAACTGACCAAGATTATTGCTTGGGAATCTGAAGGATGGTTATTTCCAAAACAGGTTGAGGGTGAAGAGAAAGTAAGCTCAATGGTGTCTTCAAGTGTAGATTGTCTTCTTCTCCCAGGGTGCAAACTCTCAGATGATTTTTTCCCAATAACATGGTTTGCTAATGTAAAAGAGTTAGACCTGTCAAGGAATACTTTCACGGTTCTTCCTGAATGCATAAGCAATTGTTATTTTTTATGTAAGCTTATTTTAGATAACTGTCATAGTCTTCGAGAGATTAGAGGGATTCCGCCAAACATACGACATTTATCAGCAAGATATTGTAAATCCTTCACTTCTTCTGGCAGAAGCACTTTACTGAATCAGAAACTGCATGAGACGGGAAACACCATGTTTTGGTTTTCAGGAGCAAGTTTTCCAGAATGGTTCGAGCACCGCAGTCAGGGACCATCTTGTTCTTTCTGGGTTGGGAACAAATTCCCTGCCATTGCTCTTTGTATTGTTATTGGACCAACTCATTTGGACCATATTGAGATTGTTGGACCTATCATGATCATCAATGGCATTGACTGTTCACTTGTTGATGGGTTGGTTAATCCTTATTTATGGATACCCCCTCATCACACATATCTTTTCGATTTGCAACATATAGTTTCTTCAGATTATCTTGACAGATTTGTTTCAGAAAAGGAATGGAATCACGTGGAGATTAGATACTCAGTCAAGCAGAGATTCAGTGAAAAAGACAAACATGTGGTGATACCAGTCTCTATAGAAAATGGAATCTATGTGTTCAAACAGAGGAGCAGCATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGATCCAGAGTAG	3195	0.395	MAVPSFSSSFTYDVFLSFRGEDTRYGFTGNLYTALHDSGIYTFIDDEELPKGDEITTSLQKAIEGSRIFIIVFSHNYASSSFCLNELAYILPYAKRNGLLVLPLFYDVVPSHVRHHTGTFGEALDTHENKFKGTSEGFELNMEKLNRWKMALRGAANLSGYHFKHGEEYEYQFIKRIVKLVSNKINRAPLHVADYPVGLETRMLEVKLLLDVGSDDGVHMVGIHGFGGVGKTTLALAVYNSIADNFEGLCFLENVRENSNKHGLQHLQSLLLSQMVGENNINITSVKQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGRADWFGPGSRVIITTRDKHLLSCQLVEKIYEVKKLKKKDALRLLSWKGFKTEEVHPSYVNVMGRVLAYASGHPLALEVIGSKLFRKSVKEWESAIHQYQKIPNNQILEMLKISFDSLEEVEKSVFLDIACCFKGYALSEVENILRAHYGDCMKYHIGVLVEKSLIKYRWNSVVTLHDLIEDMGKEIVRQKSPNKPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNYSLPDKEEIVEWNRKAFKKMKNLKTLIIKSGNFSEGPKYLPNSLRVMEWLKYPSQGLPPDFRSKELAICKLPASCFGSLELAELSKKFMNMTLLNFDECEGLTQIPDVSGLPNLVEISFKNCKSLITIHDSIGLLGKLNSLNAVGCSKLRSFPPLKLTSLENLELSYCYSLESFPEILGKMGKITELFLECCDIKELPFSFQNLTELQTLQLRYCPMLRLPSSIVMMPKLTKIIAWESEGWLFPKQVEGEEKVSSMVSSSVDCLLLPGCKLSDDFFPITWFANVKELDLSRNTFTVLPECISNCYFLCKLILDNCHSLREIRGIPPNIRHLSARYCKSFTSSGRSTLLNQKLHETGNTMFWFSGASFPEWFEHRSQGPSCSFWVGNKFPAIALCIVIGPTHLDHIEIVGPIMIINGIDCSLVDGLVNPYLWIPPHHTYLFDLQHIVSSDYLDRFVSEKEWNHVEIRYSVKQRFSEKDKHVVIPVSIENGIYVFKQRSSMEDIQFTDPHKKRRLDVDPE*	1065

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g00501	1064	Gene3D	-	354	438	IPR042197	-
	Phac5g00501	1064	Pfam	NB-ARC domain	206	435	IPR002182	GO:0043531
	Phac5g00501	1064	Pfam	TIR domain	12	188	IPR000157	GO:0007165
	Phac5g00501	1064	Gene3D	-	183	348	IPR027417	-
	Phac5g00501	1064	PRINTS	Disease resistance protein signature	220	235	-	-
	Phac5g00501	1064	PRINTS	Disease resistance protein signature	296	310	-	-
	Phac5g00501	1064	PRINTS	Disease resistance protein signature	389	403	-	-
	Phac5g00501	1064	PRINTS	Disease resistance protein signature	701	717	-	-
	Phac5g00501	1064	Gene3D	-	9	182	IPR035897	-
	Phac5g00501	1064	ProSiteProfiles	TIR domain profile.	10	185	IPR000157	GO:0007165
	Phac5g00501	1064	SUPERFAMILY	"Winged helix" DNA-binding domain	425	532	IPR036390	-
	Phac5g00501	1064	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	161	IPR035897	-
	Phac5g00501	1064	SMART	till_3	11	158	IPR000157	GO:0007165
	Phac5g00501	1064	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	448	IPR027417	-
	Phac5g00501	1064	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	768	IPR044974	GO:0006952
	Phac5g00501	1064	Gene3D	Ribonuclease Inhibitor	541	793	IPR032675	-
	Phac5g00501	1064	Gene3D	Ribonuclease Inhibitor	794	905	IPR032675	-
	Phac5g00501	1064	SUPERFAMILY	L domain-like	554	891	-	-
	Phac5g00501	1064	FunFam	Disease resistance protein (TIR-NBS-LRR class)	8	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g00501	Phac-Chr5	3932511	3937266	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g00501	4	776	WRKY Transcription Factor Family	AT4G12020	29.449	1.24e-72	263

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g00501	-		-	gmx:100780257	1286.55