LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g00500	ATGGGCACGTGTCCTTCTCACTGCCCACACAATGAGTCAGTTGTTCTGATGGCTGTGCCATCATTCTCCTCTTCCTTCACCTACGACGTCTTCCTCAGCTTCAGAGGAGAAGATACTCGTTACGGTTTCACCGGCAATCTCTATACAGCCCTTCATGACAGCGGAATTTACACCTTCATCGATGACGAGGAGCTCCCCAAAGGAGACGAAATCACCACCTCACTACAGAAGGCAATCGAAGGTTCCAGAATTTTCATCATCGTTTTCTCTCACAACTACGCATCTTCTTCCTTTTGCTTGAACGAGCTCGCCTACATTCTTCCCTACGCTAAGAGAAATGGTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGACACCACACGGGTACCTTTGGAGAAGCGTTAGATACTCATGAAAACAAGTTCAAAGGTACGAGTGAGGGTTTTGAGCTTAACATGGAGAAGCTCAACAGATGGAAGATGGCTCTGCGTGGAGCTGCTAACTTATCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACCAGTTTATCAAGAGGATAGTGAAATTGGTCTCTAACAAGATTAACCGTGCTCCTTTACATGTTGCGGATTATCCAGTTGGACTAGAGACACGAATGCTAGAAGTAAAGTTGCTTCTAGATGTAGGATCTGATGATGGTGTCCACATGGTAGGGATCCATGGATTCGGTGGAGTTGGTAAAACCACACTTGCTCTTGCAGTTTACAACTCCATAGCTGACAATTTTGAAGGCTTGTGTTTCCTTGAAAATGTGAGAGAGAATTCAAACAAACACGGCCTACAACATCTTCAGAGCCTCCTTCTTTCTCAAATGGTTGGAGAAAATAATATCAACATAACTAGTGTGAAACAAGGGATTTCAATGATGCAGCATAGGCTACGGCAGAAGAAGATTCTTTTGATTCTTGATGATGTTGACAAGCATGAACAGTTACAAGCAATTGTTGGAAGAGCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACTAGGGACAAACATTTGTTGTCATGTCAGTTGGTTGAAAAAATATATGAAGTGAAGAAGTTGAAAAAGAAAGATGCTCTTCGACTGCTTAGTTGGAAAGGTTTTAAAACAGAAGAAGTTCATCCAAGTTATGTGAATGTCATGGGTCGTGTACTGGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATAGGTTCGAAGTTGTTTAGAAAAAGTGTAAAAGAATGGGAATCTGCCATCCACCAGTATCAGAAAATTCCTAACAATCAAATCCTGGAGATGCTTAAAATAAGTTTTGATTCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGATATGCATTGTCAGAGGTGGAAAATATACTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAATATAGATGGAATTCTGTAGTTACATTGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGACAGAAATCACCAAATAAGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAACTCGGGAAGTGGAGAAATTGAAATCATATGTTTGAATTACTCTTTACCTGACAAAGAAGAAATAGTAGAATGGAACAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATTATTAAAAGTGGTAATTTTTCGGAAGGTCCTAAATATCTTCCAAACAGTTTAAGAGTAATGGAATGGTTAAAATATCCTTCACAAGGGCTACCGCCAGATTTTCGTTCAAAGGAACTTGCCATATGCAAATTACCTGCAAGTTGTTTTGGGTCACTCGAATTGGCCGAGTTATCAAAGAAGTTCATGAATATGACCCTTTTGAATTTTGACGAATGTGAAGGTTTAACACAGATACCTGATGTATCTGGGCTGCCAAATTTAGTAGAAATTTCATTCAAGAATTGTAAGAGTTTAATTACAATCCATGACTCCATTGGGCTCCTAGGTAAGCTTAACTCCTTGAATGCTGTTGGTTGCAGCAAGCTTAGGAGTTTTCCACCCCTCAAATTGACTTCTCTGGAAAATCTTGAACTTTCATATTGTTACAGTCTTGAGAGCTTCCCAGAAATATTAGGGAAAATGGGAAAGATAACAGAACTTTTCTTGGAGTGCTGTGACATAAAAGAATTGCCATTTTCATTTCAAAATCTCACTGAGCTTCAAACATTACAGTTGCGTTACTGTCCCATGTTAAGGTTGCCAAGTAGTATTGTCATGATGCCAAAACTGACCAAGATTATTGCTTGGGAATCTGAAGGATGGTTATTTCCAAAACAGGTTGAGGGTGAAGAGAAAGTAAGCTCAATGGTGTCTTCAAGTGTAGATTGTCTTCTTCTCCCAGGGTGCAAACTCTCAGATGATTTTTTCCCAATAACATGGTTTGCTAATGTAAAAGAGTTAGACCTGTCAAGGAATACTTTCACGGTTCTTCCTGAATGCATAAGCAATTGTTATTTTTTATGTAAGCTTATTTTAGATAACTGTCATAGTCTTCGAGAGATTAGAGGGATTCCGCCAAACATACGACATTTATCAGCAAGATATTGTAAATCCTTCACTTCTTCTGGCAGAAGCACTTTACTGAATCAGAAACTGCATGAGACGGGAAACACCATGTTTTGGTTTTCAGGAGCAAGTTTTCCAGAATGGTTCGAGCACCGCAGTCAGGGACCATCTTGTTCTTTCTGGGTTGGGAACAAATTCCCTGCCATTGCTCTTTGTATTGTTATTGGACCAACTCATTTGGACCATATTGAGATTGTTGGACCTATCATGATCATCAATGGCATTGACTGTTCACTTGTTGATGGGTTGGTTAATCCTTATTTATGGATACCCCCTCATCACACATATCTTTTCGATTTGCAACATATAGTTTCTTCAGATTATCTTGACAGATTTGTTTCAGAAAAGGAATGGAATCACGTGGAGATTAGATACTCAGTCAAGCAGAGATTCAGTGAAAAAGACAAACATGTGGTGATACCAGTCTCTATAGAAAATGGAATCTATGTGTTCAAACAGAGGAGCAGCATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGATCCAGAGTAG	3243	0.3969	MGTCPSHCPHNESVVLMAVPSFSSSFTYDVFLSFRGEDTRYGFTGNLYTALHDSGIYTFIDDEELPKGDEITTSLQKAIEGSRIFIIVFSHNYASSSFCLNELAYILPYAKRNGLLVLPLFYDVVPSHVRHHTGTFGEALDTHENKFKGTSEGFELNMEKLNRWKMALRGAANLSGYHFKHGEEYEYQFIKRIVKLVSNKINRAPLHVADYPVGLETRMLEVKLLLDVGSDDGVHMVGIHGFGGVGKTTLALAVYNSIADNFEGLCFLENVRENSNKHGLQHLQSLLLSQMVGENNINITSVKQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGRADWFGPGSRVIITTRDKHLLSCQLVEKIYEVKKLKKKDALRLLSWKGFKTEEVHPSYVNVMGRVLAYASGHPLALEVIGSKLFRKSVKEWESAIHQYQKIPNNQILEMLKISFDSLEEVEKSVFLDIACCFKGYALSEVENILRAHYGDCMKYHIGVLVEKSLIKYRWNSVVTLHDLIEDMGKEIVRQKSPNKPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNYSLPDKEEIVEWNRKAFKKMKNLKTLIIKSGNFSEGPKYLPNSLRVMEWLKYPSQGLPPDFRSKELAICKLPASCFGSLELAELSKKFMNMTLLNFDECEGLTQIPDVSGLPNLVEISFKNCKSLITIHDSIGLLGKLNSLNAVGCSKLRSFPPLKLTSLENLELSYCYSLESFPEILGKMGKITELFLECCDIKELPFSFQNLTELQTLQLRYCPMLRLPSSIVMMPKLTKIIAWESEGWLFPKQVEGEEKVSSMVSSSVDCLLLPGCKLSDDFFPITWFANVKELDLSRNTFTVLPECISNCYFLCKLILDNCHSLREIRGIPPNIRHLSARYCKSFTSSGRSTLLNQKLHETGNTMFWFSGASFPEWFEHRSQGPSCSFWVGNKFPAIALCIVIGPTHLDHIEIVGPIMIINGIDCSLVDGLVNPYLWIPPHHTYLFDLQHIVSSDYLDRFVSEKEWNHVEIRYSVKQRFSEKDKHVVIPVSIENGIYVFKQRSSMEDIQFTDPHKKRRLDVDPE*	1081

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g00500	1080	SUPERFAMILY	Toll/Interleukin receptor TIR domain	21	177	IPR035897	-
	Phac5g00500	1080	Pfam	NB-ARC domain	222	451	IPR002182	GO:0043531
	Phac5g00500	1080	Gene3D	-	370	454	IPR042197	-
	Phac5g00500	1080	FunFam	Disease resistance protein (TIR-NBS-LRR class)	24	203	-	-
	Phac5g00500	1080	PRINTS	Disease resistance protein signature	312	326	-	-
	Phac5g00500	1080	PRINTS	Disease resistance protein signature	405	419	-	-
	Phac5g00500	1080	PRINTS	Disease resistance protein signature	717	733	-	-
	Phac5g00500	1080	PRINTS	Disease resistance protein signature	236	251	-	-
	Phac5g00500	1080	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	28	785	IPR044974	GO:0006952
	Phac5g00500	1080	ProSiteProfiles	TIR domain profile.	26	201	IPR000157	GO:0007165
	Phac5g00500	1080	SMART	till_3	27	174	IPR000157	GO:0007165
	Phac5g00500	1080	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	198	464	IPR027417	-
	Phac5g00500	1080	Gene3D	Ribonuclease Inhibitor	810	921	IPR032675	-
	Phac5g00500	1080	SUPERFAMILY	"Winged helix" DNA-binding domain	441	548	IPR036390	-
	Phac5g00500	1080	Gene3D	Ribonuclease Inhibitor	557	809	IPR032675	-
	Phac5g00500	1080	Gene3D	-	25	198	IPR035897	-
	Phac5g00500	1080	SUPERFAMILY	L domain-like	570	907	-	-
	Phac5g00500	1080	Gene3D	-	199	364	IPR027417	-
	Phac5g00500	1080	Pfam	TIR domain	28	204	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g00500	Phac-Chr5	3932511	3937418	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g00500	20	792	WRKY Transcription Factor Family	AT4G12020	29.838	1.22e-72	263

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g00500	-		-	gmx:100780257	1286.55