Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00494 ATGAGTGTTATGTATAGTCCTGTTCTCAAGTACTCAGATGTGGAGCATCGGCTAATGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAGCAATACTGTCACCAACCCAATTCTGGACTACAGAGGTATTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTAATTGACAACAATATTCATGACTGTTTCAACGAGGAATCTTTCACAAGTGAGATTCATCAGCATTATCCTCCATCCACAAGTTCAGAAATGGACACCATGTTGTCCAAATTGCTACCATCCAACAATGGATGGAGCAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTAAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACAACAGAATGAATATTCTTATGGTGGCTCTCAGTTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCAGTGCTTTTGGTAGCTCTTTTGGTGTGGTGAACTCCATGGCCTCAGAGAATCCCATTCACTCTAAATTGGGTGCCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGTTCCCCTGCAGGATTTTTCTCCATTCAAAATGATCTTGCAGCATTGAGAGAAGTAGGTGCCTTTAAAGCCAATGATGTTTCAAATGGACAGGCTACTACATCAACTAGTGGGTTGAGTAGTTCTCTTGCTTTCTCATCTAGGCCATCTTCATGCCTCAAACATATGCCACAAATTGCTGAAAATGGAAATGAAAGCCTTGAAGAAAATTGTGACCAAAGTAGGATCCTAGTTAATGAAGATGGTAACTCAAAGTTCTGCATACCAAGCTTCACCAGTGAAATCTGGGAAAGTTCTTCATTCAATGCCCCCAAAACAGAAAGTGATGACGAAATCATGTTTTCCACTTCAAATGGTTTGGAATCTCAGGAATCAGACTTTGGCTATCAAAATCTTGGTTTGACCCACCATCAGAGCCTACCTAGCTCTTCTACTAAGATGTCATCCATACAGAGGTTTCTTGAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAGTCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTACATCAAGGACCTTCGGCAACAAGTTAAGGTACTAAAGACTTACAAAATCTTTCCATAA 1272 0.408 MSVMYSPVLKYSDVEHRLMKNQEMDSSIGNPQQYCHQPNSGLQRYCSAPSSLLASLIDNNIHDCFNEESFTSEIHQHYPPSTSSEMDTMLSKLLPSNNGWSNSEALQEFGSKPVKQEIGESVPQGPPQQNEYSYGGSQLIYQSQQIQGLPNGSSSAFGSSFGVVNSMASENPIHSKLGARNCSNLFRQKSSPAGFFSIQNDLAALREVGAFKANDVSNGQATTSTSGLSSSLAFSSRPSSCLKHMPQIAENGNESLEENCDQSRILVNEDGNSKFCIPSFTSEIWESSSFNAPKTESDDEIMFSTSNGLESQESDFGYQNLGLTHHQSLPSSSTKMSSIQRFLEIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLKTYKIFP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00494 423 CDD bHLH_AtbHLH_like 364 416 IPR045239 -
Phac5g00494 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 420 IPR036638 GO:0046983
Phac5g00494 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Phac5g00494 423 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 417 - -
Phac5g00494 423 Gene3D - 361 421 IPR036638 GO:0046983
Phac5g00494 423 SMART finulus 365 415 IPR011598 GO:0046983
Phac5g00494 423 Pfam Helix-loop-helix DNA-binding domain 365 409 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00494 Phac-Chr5 3857194 3860823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00494 34 415 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.321 6.75e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac5g00494 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00494 - - gmx:100812802 681.404