Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac5g00479 | ATGGGTCGAGGGAAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGGCAAGTCACCTTCTCCAAGCGCAGAACAGGCTTGTTCAAAAAGGCACAAGAACTCTCCATTCTATGCGACTCCGAGGTTGCCGTCATAGTTTTTTCCAACACTGGCAAGCTCTTTGAGTTTTCCAGTTCCGGCATGATGCGTACACTTTCAAGATACAACAAATGTCTTGGTTCCACTGATGTTACTGTAGCAGAAATTAATTCACAGAAGGAAGATTCTAAGATGGTGGACATTCTAAGAGACGAAATTTCAAAGATAGAAACAAAGCAATTACAGTTATTGGGCAAGGATCTGTCAGGATTGGGAATAAAGGAATTGCAAAATTTAGAACAGCAACTTAGTGAGGGATTATTGTCTGTCAAGGCAAGAAAGGAGGAACTACTTATGGAGCAGCTGGAGCAATCTAGAGTTCAGGAACAGCGGGTTATGTTGGAGAATGAAACTTTGCGCAGACAGATTGAGGAGCTTCGTTGTCTGTTTCCGCAAACAGAAAGCATGGTGCCATTTCAATATCCACCTTCTGAAAGAAAGAACACCTTTGTAAATACTGGTGCCAGATGTCTCAACTTGGCCAATAACTGTGGCCATGAGAAAGGAAGTTCAGACACAGTATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGACCGCAAGAAAGAAATCTTTTCAAATGA | 729 | 0.428 | MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDSEVAVIVFSNTGKLFEFSSSGMMRTLSRYNKCLGSTDVTVAEINSQKEDSKMVDILRDEISKIETKQLQLLGKDLSGLGIKELQNLEQQLSEGLLSVKARKEELLMEQLEQSRVQEQRVMLENETLRRQIEELRCLFPQTESMVPFQYPPSERKNTFVNTGARCLNLANNCGHEKGSSDTVFHLGLPAGVQEEGPQERNLFK* | 243 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac5g00479 | 242 | Gene3D | - | 13 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 164 | - | - | |
Phac5g00479 | 242 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Phac5g00479 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | Coils | Coil | 156 | 176 | - | - | |
Phac5g00479 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Phac5g00479 | 242 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Phac5g00479 | 242 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac5g00479 | Phac-Chr5 | 3706712 | 3713366 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac5g00479 | 1 | 232 | MADS-box Gene Family | AT5G13790 | 54.008 | 3.58e-77 | 232 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Phac5g00479 | K-box | 4e-17 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac5g00479 | - | - | gmx:547732 | 437.958 |