Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00414 ATGAAGCGTAAATGGTGTAGTACGGAAGAGGAAATTGTTAAAGAATTCTCCGAAGATGGATTATCGATACTTAAGCTTCTATGGACTATGCAAGGAGAAAAAGATCCTCAAAAATGGCATGAAAATATCTTTGGTAACAAAAGATGCAAGCACTCCGAAAACATTGTTGAAGAATTGTCAGAGGCATCAAAATTTGAAGATGGTGCAGATGTTTCTTTAGAAAATTTAGATCAACAAAATTTAGATCAAGAAGCTCAATTCTTCACTGAAATTTCATCACCAGAGGTATGTTTTTCCTCGCAAGAACATCTCATTCCTGATAGTTATAGTCCTTCCTCTTTGCCACTTATGGAGAATTTTAGAGAGTATATCTTAGAGCAAGGTGAACCTCTTCACAAGCAACTCACAACGAGTGATGTGAATGTCAATCAAAATAGACTTCTTCTCAACAAAAATCATGTTGAAAAATCATTTTTACCATTGTTGAAAAATGATGAAAATATTGAGAGAGGAATTCAAGTTTGTGTCTATGATGCTCATCAAAATACTTATAGTTTGACATTCAAGAAATGGACAAATAAATACTATGTGTTGAATGGTGGGTGGAAAGAATTCTTCCAAGTTCATAAATTACAGAAGAATGATTGCATTACAGTGTGTATATTTCGTCATTCAAGTGATAACAAATTATATTTCGCTCTTGATTATAAGAAGATTGGAAGTGACAAGATACAAGACCTATCATGA 747 0.332 MKRKWCSTEEEIVKEFSEDGLSILKLLWTMQGEKDPQKWHENIFGNKRCKHSENIVEELSEASKFEDGADVSLENLDQQNLDQEAQFFTEISSPEVCFSSQEHLIPDSYSPSSLPLMENFREYILEQGEPLHKQLTTSDVNVNQNRLLLNKNHVEKSFLPLLKNDENIERGIQVCVYDAHQNTYSLTFKKWTNKYYVLNGGWKEFFQVHKLQKNDCITVCIFRHSSDNKLYFALDYKKIGSDKIQDLS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00414 248 Pfam B3 DNA binding domain 132 231 IPR003340 GO:0003677
Phac5g00414 248 ProSiteProfiles B3 DNA-binding domain profile. 132 238 IPR003340 GO:0003677
Phac5g00414 248 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 114 235 IPR005508 GO:0003677
Phac5g00414 248 SMART B3_2 131 238 IPR003340 GO:0003677
Phac5g00414 248 CDD B3_DNA 133 228 IPR003340 GO:0003677
Phac5g00414 248 SUPERFAMILY DNA-binding pseudobarrel domain 132 226 IPR015300 -
Phac5g00414 248 Gene3D - 129 242 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00414 130 240 B3 DNA Binding Superfamily AT4G03170 39.823 1.88e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac5g00414 B3 9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00414 - - pvu:PHAVU_005G031300g 392.119