LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g00405	ATGGAAGTGGTGGAAAAGAGAAATTTTTCTAAACTGTTGTCGGAGCTGATAGTTTTAGCCGATGAGGTTGCTTCTCTTGCTAAGAACTCTGAAATTGAGGTACATATTTTTGCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATTTTCAATGACTTGAGAGACGAAAACGCAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAGTGAGCTGAGGCGTGCCAAGGCTTTGACAAAAAGCTCGAATTTGAGGCAGCCAATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCCTTTGGCCTTCTGCTCGTGGCCAGCCTAGAAATTTCCATGGATTTCAGAGAAAAGATTGGCACATTGCAAAGACAATTGATGAATGTGAGATTTGATGGCAGTTCAAGTGTGGCTTCAAGTCCAAAATCAGAGGTTTCAGGCAGTGAAGTGAAGCTGAGTGGAGAAATAGAAGAGGAAGTAGTTAACGTTTCTATTGATGATGTTGTTTTGCAACTTAAGAATGGCAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAAGGTGTGAAAGACTTGATGGTGGCTTGATTAACGAGGAAGCAACTCTTGCCATTCTTTTCAACCGTCTAGGTTCATGTAAGGCAGACAATAGGTTGGCAATCATGCGATTGCTAAGAAGTATTGCTTTAGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGAGTTCTTATCAGCAGTGGTGAAGTCACTGACAAGAGATTCAGAGGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGAGCTCTCTGACATTCAGGCCGTTCGCCGGCGAATTGGAAGAATTCAAGGATGTATTGTTATGTTAGTTTCTATACTTAATGGGGATGACCCTGATGCCTCACATGATGCAGCAAAGTTATTGAATATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCTGAGGCTGGCTACTTTAGGCCACTTGTGCAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCAAGGTTGGAACTCCCTGATCACAGCAAACTTTCCCTTGGAGAAGATGGGGCAATTGAGCCACTTGTCAATATGTTCATTACTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAACGCGCTACAAAATCTGTCAACCAAGGCAGAAAACGTGCAGCGTCTGATCAGATCAGGAATTGCAGGATCTCTGCTACAACTTCTTTTCTCTGTCACATCTGTCCTCATGACCTTGCGTGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCCGAATCCATCCTTGTCAATGAAGATGTGGCTCAGCAGATGCTTTCCCTTTTGAATCTTTCCAGCCCTATAATCCAGGGCCATTTATTAGAAGCTCTAAATAACATAGCCTCTCACCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAACTCCTCTTACCCTTTATGAAGGAAAACACCACCAAAGTCAGGAGTAAGGTCTTGCATTTGTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCACCTCTTAAACATAGTTAACATAGTCTCAACATCAACATCAGACACTGAAAGGGCTGCAGCTGTTGGCATACTCAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATATACTGCAGAGAGCAAATTTGCTGCCCATTTTGATATCCATCATGTATACTATCACAGGAAGTAACTCATCCACAACAAATACCTTAGCAGAGAGTATTGCCAGTGTTATCATTCGCTTCACAAATTCCTCTGACAAAAAACTGCAACTTCTCTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAACCGGTTCACCAATCACAAAAGCAAGGGCTGCAGCCTCACTTGCACAACTATCTCAGAATTCTCTGTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCCTCAGTGAATGCATACTGTGAGGTCCATGATGGATATTGCTTTGTCAACAGCACTTTTTGTTTGGTCAAAGCAGGTGCTGTTTCTCCCCTCATCCAACTATTGGAAGATTCTGAGAGACAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAGTTCCATTGCCAAGTTATCAGGTGTGCAACCTATTATAAAGAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTCAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTGGCTGAGCTTGAGCTCTTGCAATCTCAATCAAGTTACTTTTGA	2493	0.4184	MEVVEKRNFSKLLSELIVLADEVASLAKNSEIEVHIFAEFAMLVEKFSPIFNDLRDENAVLDKPPIRKSLESLESELRRAKALTKSSNLRQPIKQIEDITHDIGRSFGLLLVASLEISMDFREKIGTLQRQLMNVRFDGSSSVASSPKSEVSGSEVKLSGEIEEEVVNVSIDDVVLQLKNGNDEEFAVSLLRLKEFIRCERLDGGLINEEATLAILFNRLGSCKADNRLAIMRLLRSIALGNDEKKEKMVDIEFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVSILNGDDPDASHDAAKLLNILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFITGKLESKLSALNALQNLSTKAENVQRLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFMKENTTKVRSKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDTERAAAVGILSNLPASNKKVTDILQRANLLPILISIMYTITGSNSSTTNTLAESIASVIIRFTNSSDKKLQLLSAEQGVIPLLVKLLSTGSPITKARAAASLAQLSQNSLSLRKSRKSRWLCVPPSVNAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEDSERQAVEAALHALSTLLQDEIWEGGVSSIAKLSGVQPIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF*	831

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g00405	830	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	175	830	-	-
	Phac5g00405	830	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	376	418	IPR000225	GO:0005515
	Phac5g00405	830	SUPERFAMILY	ARM repeat	372	784	IPR016024	-
	Phac5g00405	830	SUPERFAMILY	ARM repeat	165	488	IPR016024	-
	Phac5g00405	830	SMART	arm_5	698	738	IPR000225	GO:0005515
	Phac5g00405	830	SMART	arm_5	365	405	IPR000225	GO:0005515
	Phac5g00405	830	SMART	arm_5	324	364	IPR000225	GO:0005515
	Phac5g00405	830	SMART	arm_5	626	666	IPR000225	GO:0005515
	Phac5g00405	830	SMART	arm_5	242	281	IPR000225	GO:0005515
	Phac5g00405	830	SMART	arm_5	406	449	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g00405	Phac-Chr5	3294988	3299989	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g00405	215	830	U-box Gene Family	AT1G76390	29.439	1.32e-48	183

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g00405	K08332		-	gmx:100791453	1346.64

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