Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00405 ATGGAAGTGGTGGAAAAGAGAAATTTTTCTAAACTGTTGTCGGAGCTGATAGTTTTAGCCGATGAGGTTGCTTCTCTTGCTAAGAACTCTGAAATTGAGGTACATATTTTTGCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATTTTCAATGACTTGAGAGACGAAAACGCAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAGTGAGCTGAGGCGTGCCAAGGCTTTGACAAAAAGCTCGAATTTGAGGCAGCCAATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCCTTTGGCCTTCTGCTCGTGGCCAGCCTAGAAATTTCCATGGATTTCAGAGAAAAGATTGGCACATTGCAAAGACAATTGATGAATGTGAGATTTGATGGCAGTTCAAGTGTGGCTTCAAGTCCAAAATCAGAGGTTTCAGGCAGTGAAGTGAAGCTGAGTGGAGAAATAGAAGAGGAAGTAGTTAACGTTTCTATTGATGATGTTGTTTTGCAACTTAAGAATGGCAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAAGGTGTGAAAGACTTGATGGTGGCTTGATTAACGAGGAAGCAACTCTTGCCATTCTTTTCAACCGTCTAGGTTCATGTAAGGCAGACAATAGGTTGGCAATCATGCGATTGCTAAGAAGTATTGCTTTAGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGAGTTCTTATCAGCAGTGGTGAAGTCACTGACAAGAGATTCAGAGGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGAGCTCTCTGACATTCAGGCCGTTCGCCGGCGAATTGGAAGAATTCAAGGATGTATTGTTATGTTAGTTTCTATACTTAATGGGGATGACCCTGATGCCTCACATGATGCAGCAAAGTTATTGAATATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCTGAGGCTGGCTACTTTAGGCCACTTGTGCAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCAAGGTTGGAACTCCCTGATCACAGCAAACTTTCCCTTGGAGAAGATGGGGCAATTGAGCCACTTGTCAATATGTTCATTACTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAACGCGCTACAAAATCTGTCAACCAAGGCAGAAAACGTGCAGCGTCTGATCAGATCAGGAATTGCAGGATCTCTGCTACAACTTCTTTTCTCTGTCACATCTGTCCTCATGACCTTGCGTGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCCGAATCCATCCTTGTCAATGAAGATGTGGCTCAGCAGATGCTTTCCCTTTTGAATCTTTCCAGCCCTATAATCCAGGGCCATTTATTAGAAGCTCTAAATAACATAGCCTCTCACCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAACTCCTCTTACCCTTTATGAAGGAAAACACCACCAAAGTCAGGAGTAAGGTCTTGCATTTGTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCACCTCTTAAACATAGTTAACATAGTCTCAACATCAACATCAGACACTGAAAGGGCTGCAGCTGTTGGCATACTCAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATATACTGCAGAGAGCAAATTTGCTGCCCATTTTGATATCCATCATGTATACTATCACAGGAAGTAACTCATCCACAACAAATACCTTAGCAGAGAGTATTGCCAGTGTTATCATTCGCTTCACAAATTCCTCTGACAAAAAACTGCAACTTCTCTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAACCGGTTCACCAATCACAAAAGCAAGGGCTGCAGCCTCACTTGCACAACTATCTCAGAATTCTCTGTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCCTCAGTGAATGCATACTGTGAGGTCCATGATGGATATTGCTTTGTCAACAGCACTTTTTGTTTGGTCAAAGCAGGTGCTGTTTCTCCCCTCATCCAACTATTGGAAGATTCTGAGAGACAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAGTTCCATTGCCAAGTTATCAGGTGTGCAACCTATTATAAAGAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTCAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTGGCTGAGCTTGAGCTCTTGCAATCTCAATCAAGTTACTTTTGA 2493 0.4184 MEVVEKRNFSKLLSELIVLADEVASLAKNSEIEVHIFAEFAMLVEKFSPIFNDLRDENAVLDKPPIRKSLESLESELRRAKALTKSSNLRQPIKQIEDITHDIGRSFGLLLVASLEISMDFREKIGTLQRQLMNVRFDGSSSVASSPKSEVSGSEVKLSGEIEEEVVNVSIDDVVLQLKNGNDEEFAVSLLRLKEFIRCERLDGGLINEEATLAILFNRLGSCKADNRLAIMRLLRSIALGNDEKKEKMVDIEFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVSILNGDDPDASHDAAKLLNILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFITGKLESKLSALNALQNLSTKAENVQRLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFMKENTTKVRSKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDTERAAAVGILSNLPASNKKVTDILQRANLLPILISIMYTITGSNSSTTNTLAESIASVIIRFTNSSDKKLQLLSAEQGVIPLLVKLLSTGSPITKARAAASLAQLSQNSLSLRKSRKSRWLCVPPSVNAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEDSERQAVEAALHALSTLLQDEIWEGGVSSIAKLSGVQPIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00405 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 175 830 - -
Phac5g00405 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Phac5g00405 830 SUPERFAMILY ARM repeat 372 784 IPR016024 -
Phac5g00405 830 SUPERFAMILY ARM repeat 165 488 IPR016024 -
Phac5g00405 830 SMART arm_5 698 738 IPR000225 GO:0005515
Phac5g00405 830 SMART arm_5 365 405 IPR000225 GO:0005515
Phac5g00405 830 SMART arm_5 324 364 IPR000225 GO:0005515
Phac5g00405 830 SMART arm_5 626 666 IPR000225 GO:0005515
Phac5g00405 830 SMART arm_5 242 281 IPR000225 GO:0005515
Phac5g00405 830 SMART arm_5 406 449 IPR000225 GO:0005515
Phac5g00405 830 SMART arm_5 742 782 IPR000225 GO:0005515
Phac5g00405 830 SMART arm_5 491 531 IPR000225 GO:0005515
Phac5g00405 830 Coils Coil 70 90 - -
Phac5g00405 830 Gene3D - 206 331 IPR011989 -
Phac5g00405 830 Gene3D - 695 828 IPR011989 -
Phac5g00405 830 Gene3D - 332 677 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00405 Phac-Chr5 3294988 3299989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00405 215 830 U-box Gene Family AT1G76390 29.439 1.32e-48 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00405 K08332 - gmx:100791453 1346.64