Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00380 ATGGATGGAACAGTTTTTTGCTACCCCTTGTGGTCGATCCGCGTGATCAGTTTCTGCTTGGTCAATTGGGGTGTCTTGGATTGTTTGGGGACTTGCAAAAAATGGCTGGTGGGGGTTGGTTGTACAAGCATGACATCTAGTCATCCATTCTTTGATGATATACGAAGCAGATCAAGTGTTGATCCTCCTCAAACGGAAGAGCCAACTGAAATTGGTGAACTTGTGAATGAGCCTCTGCAGACTTCTCTTAAGCCTCATGGGACTGTTACAAGCAGTGTTCGTGAGCTGTTAGAGTGCCCTGTTTGTTTAAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCATGAGCTTGGCAATATCAGATGTCTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATGGGGATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTACAATTGTCCATATGCTGGTTCAGAATGTTCTGTTATGGGTGATATACCTTACCTGGTGAACCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTTAATCACCGTTATGTCAAAACAAACCCACAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTATTTCTGTCTACACTTTGAAGCTTTTCAGCTGGGAATGGCTCCTGTCTACATAGCTTTTTTGCGGTTCATGGGGGATGACAACGAGGCCAAGAACTACACTTACAGTTTGGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAGGGTGTGCCTAGAAGCATTAGGGATAGCCACCGGAAGGTTCGTGACAGTTTTGATGGTCTGATAATTCAGAGGAGCATGGCTCTATTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTAAGAGTAACTGGGAGAATTTGGAAAGAACAATGA 1044 0.4416 MDGTVFCYPLWSIRVISFCLVNWGVLDCLGTCKKWLVGVGCTSMTSSHPFFDDIRSRSSVDPPQTEEPTEIGELVNEPLQTSLKPHGTVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVNHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00380 347 FunFam E3 ubiquitin-protein ligase SINAT5-like 57 150 - -
Phac5g00380 347 CDD Sina 213 341 - -
Phac5g00380 347 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 208 340 IPR008974 GO:0005515
Phac5g00380 347 FunFam E3 ubiquitin-protein ligase SINAT5-like 208 340 - -
Phac5g00380 347 ProSiteProfiles Zinc finger SIAH-type profile. 152 212 IPR013010 GO:0008270
Phac5g00380 347 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 77 346 - -
Phac5g00380 347 CDD RING-HC_SIAHs 97 135 - -
Phac5g00380 347 Pfam Seven in absentia protein family 141 340 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phac5g00380 347 SUPERFAMILY RING/U-box 89 138 - -
Phac5g00380 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 207 IPR013083 -
Phac5g00380 347 FunFam E3 ubiquitin-protein ligase SINAT3 151 207 - -
Phac5g00380 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 150 IPR013083 -
Phac5g00380 347 ProSiteProfiles Zinc finger RING-type profile. 99 135 IPR001841 -
Phac5g00380 347 SUPERFAMILY TRAF domain-like 152 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00380 Phac-Chr5 3114342 3118685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00380 90 347 C3H Transcription Factor Family AT2G41980 79.070 1.82e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00380 K04506 - gmx:100793457 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g00380 5 3114342 3118685 Phac5g00380 5 3114342 3118685 ECH