LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g00374	ATGGAGATGTCTGTTCAACCAGAAAATCCTAATACCAATGGTATATCAGGATCAGGATCATGTCTTTATGATTTGTTTTGTTCAGAAAATCCTAGTTTCAATGCTCACGTTGTAAGAGAACAATGGATGTCTTCTGGTCCACAGAAAAGACTAGATAGTTTGATGCGTCAAGCTGGGAATAGGTATTGTGCCGATTGTGGAGCATTAGAGCCAAAATGGGTGTCTTTAAACCTTGGAGTATTTATTTGCATCAAATGTTCTGGAATACATAGAAGCCTAGGTGTTCATATATCCAAGGTTCTGTCCCTAAACCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAATTGGGTGGAAATACAGTAGTCAACAAGAAGTATGAAGCTCTCCTTCCAATTAATAACATAAGAAAACCAAAACCAGATTCTTCTATTGAAGAGCGTTCAGATTTCATTAGGAGAAAATACGAGTATCTGCAGTTTTCTGATACTGAGGAGAACATGTCTTGTCCCTTCATACCACCCCATTCAGGAAGTTCATCAGATTCTCAAATCAGTTACTCAAGAAATCCTTTCACACGAGAAAAAAAACATTGTGATAATAAACAACCAACTAGACACTTCATTGGCAGAACATTTCGAAATAGTCGAGGAAGAAAAGATTGTCATGACTTTAGAGCTAAGAAGACCAACTCATTGGCAGGTATGACCGAATTTGTTGGGTTGATAAAGGTGAATGTGGTTAAGGGCACTAATCTTGCAGTTCGTGATGTGATGAGTAGTGATCCTTATGTGACCATATCTCTAGGTCACCAATCAGTGAAGACACGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCAGATTGCATTCCTCCTCTTAAAATTATTGTGCTTGACAAAGATACATTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTCAGCTGCAATGGCATATGAAAAATCTTCAGTGAATGAGAGTAAGGAAGTTGGAAAATGGATGGCAAGTGGTGACAACACTCTTATTAAAGATGGTATCATTTCCCTTGAAGATGGACAAATCAAACAAGAGATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGTTGGAGATTGAACTAGAATGTGTTCCTTTAACTCAGTAG	1200	0.3775	MEMSVQPENPNTNGISGSGSCLYDLFCSENPSFNAHVVREQWMSSGPQKRLDSLMRQAGNRYCADCGALEPKWVSLNLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDALVKLGGNTVVNKKYEALLPINNIRKPKPDSSIEERSDFIRRKYEYLQFSDTEENMSCPFIPPHSGSSSDSQISYSRNPFTREKKHCDNKQPTRHFIGRTFRNSRGRKDCHDFRAKKTNSLAGMTEFVGLIKVNVVKGTNLAVRDVMSSDPYVTISLGHQSVKTRVIKNNLNPIWNESLMLSIPDCIPPLKIIVLDKDTFSTDDFMGEAEIDIQPLVSAAMAYEKSSVNESKEVGKWMASGDNTLIKDGIISLEDGQIKQEISLRLQHVERGVLEIELECVPLTQ*	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g00374	399	PRINTS	HIV Rev interacting protein signature	100	121	IPR001164	GO:0005096
	Phac5g00374	399	PRINTS	HIV Rev interacting protein signature	79	96	IPR001164	GO:0005096
	Phac5g00374	399	PRINTS	HIV Rev interacting protein signature	60	79	IPR001164	GO:0005096
	Phac5g00374	399	CDD	C2_ArfGAP	242	386	-	-
	Phac5g00374	399	SUPERFAMILY	ArfGap/RecO-like zinc finger	48	163	IPR037278	-
	Phac5g00374	399	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	241	399	-	-
	Phac5g00374	399	Pfam	C2 domain	244	333	IPR000008	-
	Phac5g00374	399	CDD	ArfGap	51	158	-	-
	Phac5g00374	399	FunFam	stromal membrane-associated protein 1 isoform X1	34	169	-	-
	Phac5g00374	399	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	241	335	IPR035892	-
	Phac5g00374	399	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	48	171	IPR001164	GO:0005096
	Phac5g00374	399	SMART	arf_gap_3	49	171	IPR001164	GO:0005096
	Phac5g00374	399	Pfam	Putative GTPase activating protein for Arf	49	165	IPR001164	GO:0005096
	Phac5g00374	399	Gene3D	Arf GTPase activating protein	33	172	IPR038508	-
	Phac5g00374	399	Gene3D	C2 domain	241	398	IPR035892	-
	Phac5g00374	399	ProSiteProfiles	C2 domain profile.	226	341	IPR000008	-
	Phac5g00374	399	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	41	399	IPR044518	GO:0005096\|GO:0005543
	Phac5g00374	399	SMART	C2_3c	244	339	IPR000008	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g00374	Phac-Chr5	3066090	3076000	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g00374	48	399	C2H2 Transcription Factor Family	AT4G21160	46.761	6.30e-113	332

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g00374	K12486		-	gmx:100799376	617.076