Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00373 ATGGAGATGTCTGTTCAACCAGAAAATCCTAATACCAATGGTATATCAGGATCAGGATCATGTCTTTATGATTTGTTTTGTTCAGAAAATCCTAGTTTCAATGCTCACGTTGTAAGAGAACAATGGATGTCTTCTGTAGGTCCACAGAAAAGACTAGATAGTTTGATGCGTCAAGCTGGGAATAGGTATTGTGCCGATTGTGGAGCATTAGAGCCAAAATGGGTGTCTTTAAACCTTGGAGTATTTATTTGCATCAAATGTTCTGGAATACATAGAAGCCTAGGTGTTCATATATCCAAGGTTCTGTCCCTAAACCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAATTGGGTGGAAATACAGTAGTCAACAAGAAGTATGAAGCTCTCCTTCCAATTAATAACATAAGAAAACCAAAACCAGATTCTTCTATTGAAGAGCGTTCAGATTTCATTAGGAGAAAATACGAGTATCTGCAGTTTTCTGATACTGAGGAGAACATGTCTTGTCCCTTCATACCACCCCATTCAGGAAGTTCATCAGATTCTCAAATCAGTTACTCAAGAAATCCTTTCACACGAGAAAAAAAACATTGTGATAATAAACAACCAACTAGACACTTCATTGGCAGAACATTTCGAAATAGTCGAGGAAGAAAAGATTGTCATGACTTTAGAGCTAAGAAGACCAACTCATTGGCAGGTATGACCGAATTTGTTGGGTTGATAAAGGTGAATGTGGTTAAGGGCACTAATCTTGCAGTTCGTGATGTGATGAGTAGTGATCCTTATGTGACCATATCTCTAGGTCACCAATCAGTGAAGACACGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCAGATTGCATTCCTCCTCTTAAAATTATTGTGCTTGACAAAGATACATTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTCAGCTGCAATGGCATATGAAAAATCTTCAGTGAATGAGAGTAAGGAAGTTGGAAAATGGATGGCAAGTGGTGACAACACTCTTATTAAAGATGGTATCATTTCCCTTGAAGATGGACAAATCAAACAAGAGATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGTTGGAGATTGAACTAGAATGTGTTCCTTTAACTCAGTAG 1203 0.3774 MEMSVQPENPNTNGISGSGSCLYDLFCSENPSFNAHVVREQWMSSVGPQKRLDSLMRQAGNRYCADCGALEPKWVSLNLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDALVKLGGNTVVNKKYEALLPINNIRKPKPDSSIEERSDFIRRKYEYLQFSDTEENMSCPFIPPHSGSSSDSQISYSRNPFTREKKHCDNKQPTRHFIGRTFRNSRGRKDCHDFRAKKTNSLAGMTEFVGLIKVNVVKGTNLAVRDVMSSDPYVTISLGHQSVKTRVIKNNLNPIWNESLMLSIPDCIPPLKIIVLDKDTFSTDDFMGEAEIDIQPLVSAAMAYEKSSVNESKEVGKWMASGDNTLIKDGIISLEDGQIKQEISLRLQHVERGVLEIELECVPLTQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00373 400 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 242 336 IPR035892 -
Phac5g00373 400 ProSiteProfiles C2 domain profile. 227 342 IPR000008 -
Phac5g00373 400 ProSiteProfiles ARF GTPase-activating proteins domain profile. 49 172 IPR001164 GO:0005096
Phac5g00373 400 SMART C2_3c 245 340 IPR000008 -
Phac5g00373 400 Pfam C2 domain 245 334 IPR000008 -
Phac5g00373 400 SMART arf_gap_3 50 172 IPR001164 GO:0005096
Phac5g00373 400 FunFam stromal membrane-associated protein 1 isoform X1 36 170 - -
Phac5g00373 400 CDD ArfGap 52 159 - -
Phac5g00373 400 Gene3D Arf GTPase activating protein 34 173 IPR038508 -
Phac5g00373 400 SUPERFAMILY ArfGap/RecO-like zinc finger 49 164 IPR037278 -
Phac5g00373 400 Pfam Putative GTPase activating protein for Arf 50 166 IPR001164 GO:0005096
Phac5g00373 400 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 45 400 IPR044518 GO:0005096|GO:0005543
Phac5g00373 400 CDD C2_ArfGAP 243 387 - -
Phac5g00373 400 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 242 400 - -
Phac5g00373 400 PRINTS HIV Rev interacting protein signature 61 80 IPR001164 GO:0005096
Phac5g00373 400 PRINTS HIV Rev interacting protein signature 101 122 IPR001164 GO:0005096
Phac5g00373 400 PRINTS HIV Rev interacting protein signature 80 97 IPR001164 GO:0005096
Phac5g00373 400 Gene3D C2 domain 242 399 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00373 Phac-Chr5 3066090 3076000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00373 49 400 C2H2 Transcription Factor Family AT4G21160 46.761 9.13e-113 332