Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00364 ATGGGAACCGTAGAAGGAAAAGTACATTCGTACCACTGTGAGATACGAACTAAAGAAGTGGGAGTGAAGATCGAACTCAGAGACATATTGAGGGTTGATGTGGCTATCATTGTTCGATATTATAATCATCATCTACATGCTATTCAAACATCAACCTTGTTAAAAACTTCAACTCCCATTAGCTGTCAGAATTTCTTTGAAAATGATGCAGATTTCTTGAGGAATGTGTTGTTCGACCCACGCTGTTCTTACTGCTTCTTCCCGGAAATGGTTGACCCAATATCAGAAAAAATTGTTAATATGATTAAAGTAGCCTTAGAATTTGGTGGTGGTCCTGAGTCTGTAGATTCAAAATGCAAAGAATTGCCTTTGAGTTTAGACATCATCGTGGATGTAGTTGCTGATGTAGAAAGCGAAGAGGAAGAAGAAGAAGAAAAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGATGGAGCATTATGCAGCAATGATTCCAGCATCTGCAGAAGCTATTGATTCCCTTAAAACGTTCTCAATTTCGCCTTTTTTGAAGAAGAAAATTGAGAAGTGCAATATTTGCTTGGAAAATGTTGGTTTTAGAGAGAATGAAGAGAATGTGAAGTTATCGTCGTTGCCATGTGAACATGTTTTTCATCATCTCTGTATTGTAGAGTGGCTGCAGATAAGTCACACTTGTCCTTTATGTCAAGGAAGAGTACATTCGTATCAGTGTGAGATGCGAATTGAAGAAGTGGGAGTGAAGATCAAACTCAAAGACATATTGAGGGTTGATGTGACTATCATCTACGAGTGTGTTGTTCGACCCACCCACGCTGTTCTTACTGCTTCATCCCTGGTTGGGAGTGTTCGGGACCTTGATCCTGAACACAACTCAATTGAGTCTTGTGCATGTTCTTCATTCAACATGGGAACTGTAGAAGGAAGAGTACATTCGTACCACTGTGAGATACGAACTAAAGAAGCGGGAGTGAAGATGAAATCCAGAGACATATTGAGGGTTGATGTGAATATCATTGTTCGATATTATAATCATCATCTACATGCTATTCAAACATCAACCTTATTAAAAACTTCAACTCCCATTAGCTGTCAAAATTTCTTTGAAAATAATACAGATTTCTTGAGGAGTGTGTTGTTCGACCCACGCTGTTCTTACTGCTTCTTCCCAGAAATGATTGACCCAGTATTAGAAAAAATTGTTAATATGATTAAAGTAGCCTTGGAATTTGGTGGTGCAACGATTCCAGCATCTACAGAAGCCATTGATTCCCTTAAAACGTTCTCAATTTCACCTTTCTTGAAAAAGGAAACTGAGAAGTGCAATATTTGCTTGGAAAATATTGACTTTAGAGAGAATGAAGAGAATGTGAAGTTATCGTCGTTGCCATGTGAACATGTTTTTCATCATCTCTGTATTGTAAAGTGGCTGCAGACAAGTCACACTTGTCCGTTATGTCGTTACCCTATGCCCGTTCATCATACCTGA 1551 0.3881 MGTVEGKVHSYHCEIRTKEVGVKIELRDILRVDVAIIVRYYNHHLHAIQTSTLLKTSTPISCQNFFENDADFLRNVLFDPRCSYCFFPEMVDPISEKIVNMIKVALEFGGGPESVDSKCKELPLSLDIIVDVVADVESEEEEEEEKEEEEEEEEEEEEEEEEEEEEEEEEEMEHYAAMIPASAEAIDSLKTFSISPFLKKKIEKCNICLENVGFRENEENVKLSSLPCEHVFHHLCIVEWLQISHTCPLCQGRVHSYQCEMRIEEVGVKIKLKDILRVDVTIIYECVVRPTHAVLTASSLVGSVRDLDPEHNSIESCACSSFNMGTVEGRVHSYHCEIRTKEAGVKMKSRDILRVDVNIIVRYYNHHLHAIQTSTLLKTSTPISCQNFFENNTDFLRSVLFDPRCSYCFFPEMIDPVLEKIVNMIKVALEFGGATIPASTEAIDSLKTFSISPFLKKETEKCNICLENIDFRENEENVKLSSLPCEHVFHHLCIVKWLQTSHTCPLCRYPMPVHHT* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00364 516 ProSiteProfiles Zinc finger RING-type profile. 462 508 IPR001841 -
Phac5g00364 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 514 IPR013083 -
Phac5g00364 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 256 IPR013083 -
Phac5g00364 516 ProSiteProfiles Zinc finger RING-type profile. 205 251 IPR001841 -
Phac5g00364 516 SUPERFAMILY RING/U-box 442 513 - -
Phac5g00364 516 MobiDBLite consensus disorder prediction 136 173 - -
Phac5g00364 516 MobiDBLite consensus disorder prediction 136 174 - -
Phac5g00364 516 Pfam Ring finger domain 204 251 IPR001841 -
Phac5g00364 516 Pfam Ring finger domain 461 508 IPR001841 -
Phac5g00364 516 SMART ring_2 462 507 IPR001841 -
Phac5g00364 516 SMART ring_2 205 250 IPR001841 -
Phac5g00364 516 Coils Coil 129 178 - -
Phac5g00364 516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 395 512 - -
Phac5g00364 516 SUPERFAMILY RING/U-box 185 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00364 Phac-Chr5 3038573 3046373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00364 437 512 C3H Transcription Factor Family AT1G18760 38.158 1.20e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00364 - - pvu:PHAVU_005G027800g 375.555