Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00362 ATGTCCAGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTCAGTCACCGCGACTCTGATCCAGCCTTCGCCGAGCGCTGCGAAGTCTTCAGCGACGGGGGCGAGGTCGGGTTCCGCTCCCAAACCGGCGTCGATTTGTCTCCGGTGCTGAATTCGTCGCAATGCGGCGGCGGCGGAGGATCGAAAACCAAGAGGACGCACAGCCTTGGGATGGTGAACGGGAGCATGAGTGTGGTTCACCAGCTCCACGCTATGGTCACCCGCAAGTGCATGAGAATCGACGCACGCGTGGTGTGCGTCGAGACGCCTAGGGTTGTGCTGCTGGTTGACGTGTACCTTCCTATTCACGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCGATTGCCGCCGCCGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGATTATTGTAGAAAGACTCATGGAGCAAATGAGAGTATTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATTCGCATGTTAGCAGTTCTTCAAGGAAAAGGCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGTGTTGGAAAACAGCGGATGTTTAATAGCTCGAAAATAATTCCTATGGATAACTCATCCAGATCAGGTATCTGGGAGATATCTGATGATATTTTAACTAAAATTTTATCTTCCCTAGACCCAATGGACCTCACCAGGGTTTCTGAAACATGTCATCATCTAAGATCATTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCAGTTCTCTCAACTGAAGATGGCCGTAGTTTCCACGTAAATACTGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGGGGAGGAATGTTTTGTGATGAGCCTGGATTGGGTAAGACTGTAACAACTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCGGATCCACCGGATGGGGCACAAGTTGTCTGGTGTAAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCAGCAGTAATAACATAACTGGTTGTTCTACATTGGGTAAAAGGGATGTGAGCCAAGATATCAGTAGAACTAGTGATAACCATGATTACTCCTCCAAAAGAGCCAGAAGGTCAAATCCTAATCAGCAAATCACTAAACTTCAGGGTTCATGTTCCATGGAAGTGAAGAAATCACCTGTAAAGGCATGCTTTAAGGAATCTATGCATTCAAATCAGTACACTAGGAGTTTGAGCCGGATAAAGAAAAATCTATGCTTCACATATGAAGATGAAGCTATGATTTCCAAGGAAAGAGAAATTGGTGAAGGATTAATTGAAGCAAAGCATGCATCAGATGTTGCACCTCATGTATCTCAAAAGAAGCTGCCTGGGAAGCCTGAAGGTGATCTTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGCAGACAATAGTATGGCTAGTTCTAGTGCAGCGTGGTTTTGTAGTATGAACACTGACCCTCTTTATGAAAGTTGTAGTGTCCCTGAACAACATTTTCATAATACCTCAAAGATAACACACTTGCCAGGGTTTCACTTAAAAGGAACTCATGGCGGTGAGAGACAAAATGTTTCTTTTTTCACCAGTGTGCTCAAGGAGCACCAGTCATTGATAAATTCTCAGACAAGGAGAGCCCTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGAATAAGAGGTCCCTTTTTAAACACATGTACTGCATCTAGTAGACATTTTAATGCGTTTCACAAAGTATTTCAAGCACTTGGCCTCTTAAAGAGAGTAGATAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTCAACAATTTGACTTTTGATGTGACTGCCCTTGGCATGGCACTCTGTGAGCCTTTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTCGTAGTTGTTCCTGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGATTTATGTTTGGACTGATCACCGGAAGCCATCTTTGCATTGTCTTGCGTGGGATTACGATGTTGTCTTAACCACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCTCGTAAGAAGAGTGTTTTGATGCAAGTGCATTGGTTTAGAGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCGAACACTCCTAACAGCCAACTTCCACATCTGCAACCATTGCTAAGGTTCCTTCATGAAGAGTCTTATGGACTGAATCAGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAAATGGAGGAAGGAAGGTCTCGTCTGTTACATCTACTTCACAAATGCATGATTAGTGCTAGAAAGGCAGATTTACAAAGCATTCCACCATGCATCAAGAAAATTGTTTATCTGGATTTTAATAAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACAGTACGACGTAATATATTGATGGCTGACTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGCAGGGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATATTAGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATTCCTCCATAAGATGTAATCTCTTGTACGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTTGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACCACACAAAGTGTACTTATCCTGGCTGCGGTAAATTATATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCGAAGTGGCCAGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCATGGTTTATGAAGAGCTCAGATAATTGGGATCCGGATTGGCAATCTACATCTAGTACTAAAGTCTCCTATCTTGTCCAGAAATTGAAAGCTTTGCAAGGAACCAATGAAGAGACCAGCTTCAGTAACAATGATGAGATGCCCATTGAGAATAGTTTCTCTCTGCATAGAGATGATAAATCAGCATTTCAGAAATGTTCGAAGAGCAGCACAAAGACCAATTTCAACCTCGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTACAGCCCTATGCATTCCAGCAACAAGAAGAAGTCTTTAGCCGTGTTCCAGCATGATTCAAGTTGTATGGCGCTCCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTCGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCACCGAATGGGTGCTTCTCGTCCTATTCACGTGGAAACACTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGTGTGTGAAGATCACACGCCAAGGGGAGCTGGTGGCACAGGGCAGCAGTTGGCCATGTGTCGAGCAGTGTAA 3873 0.4382 MSSDTSFADHKLCGFLCAVLTVSHRDSDPAFAERCEVFSDGGEVGFRSQTGVDLSPVLNSSQCGGGGGSKTKRTHSLGMVNGSMSVVHQLHAMVTRKCMRIDARVVCVETPRVVLLVDVYLPIHVWSGWQFPRSGAIAAAVFRHLSCDWDERSSMLSYPDYCRKTHGANESIWNLSDCHVLCCKLHSHVSSSSRKRLFELHELFKTLPGVGKQRMFNSSKIIPMDNSSRSGIWEISDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNAELLPHPLYAVLSTEDGRSFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTTLSLIMKTRGTLADPPDGAQVVWCKHNGNQKCGYYEISSNNITGCSTLGKRDVSQDISRTSDNHDYSSKRARRSNPNQQITKLQGSCSMEVKKSPVKACFKESMHSNQYTRSLSRIKKNLCFTYEDEAMISKEREIGEGLIEAKHASDVAPHVSQKKLPGKPEGDLFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNTDPLYESCSVPEQHFHNTSKITHLPGFHLKGTHGGERQNVSFFTSVLKEHQSLINSQTRRALTWLAKISTDKLAGMETNGIRGPFLNTCTASSRHFNAFHKVFQALGLLKRVDKGVCKWFYPQHLNNLTFDVTALGMALCEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSLHCLAWDYDVVLTTFSRLSAEWGPRKKSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKADLQSIPPCIKKIVYLDFNKEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDILVQSGLDPTSGEYSSIRCNLLYGGHCVRCKEWCRLPVITPCWHLLCLDCVSIDHTKCTYPGCGKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQAWFMKSSDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFSNNDEMPIENSFSLHRDDKSAFQKCSKSSTKTNFNLEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLAVFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLGFLQVCEDHTPRGAGGTGQQLAMCRAV* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00362 1290 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 670 835 IPR014001 -
Phac5g00362 1290 ProSiteProfiles Zinc finger CW-type profile. 517 568 IPR011124 GO:0008270
Phac5g00362 1290 CDD DEXDc_SHPRH-like 699 876 - -
Phac5g00362 1290 Gene3D - 518 570 - -
Phac5g00362 1290 Pfam CW-type Zinc Finger 522 565 IPR011124 GO:0008270
Phac5g00362 1290 SUPERFAMILY F-box domain 225 268 IPR036047 GO:0005515
Phac5g00362 1290 SMART fbox_2 235 275 IPR001810 GO:0005515
Phac5g00362 1290 MobiDBLite consensus disorder prediction 403 436 - -
Phac5g00362 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 359 IPR027417 -
Phac5g00362 1290 SMART helicmild6 1160 1242 IPR001650 -
Phac5g00362 1290 MobiDBLite consensus disorder prediction 405 421 - -
Phac5g00362 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 874 IPR027417 -
Phac5g00362 1290 Pfam SNF2-related domain 280 921 IPR000330 GO:0005524|GO:0140658
Phac5g00362 1290 MobiDBLite consensus disorder prediction 422 436 - -
Phac5g00362 1290 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1138 1277 IPR001650 -
Phac5g00362 1290 Pfam Helicase conserved C-terminal domain 1145 1242 IPR001650 -
Phac5g00362 1290 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1264 - -
Phac5g00362 1290 Gene3D - 1062 1271 IPR027417 -
Phac5g00362 1290 Pfam F-box domain 235 269 IPR001810 GO:0005515
Phac5g00362 1290 ProSitePatterns Zinc finger RING-type signature. 1013 1022 IPR017907 -
Phac5g00362 1290 Gene3D - 685 879 IPR038718 -
Phac5g00362 1290 CDD SF2_C_SNF 1147 1252 - -
Phac5g00362 1290 SMART ultradead3 273 846 IPR014001 -
Phac5g00362 1290 CDD F-box_SF 234 266 - -
Phac5g00362 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00362 Phac-Chr5 3011669 3024522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00362 277 356 RAD5 or RAD16-like Gene Family AT5G22750 32.184 4.14e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac5g00362 SNF2_N 7.9e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00362 - - gmx:100803102 2241.46