Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00361 ATGTCCAGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTCAGTCACCGCGACTCTGATCCAGCCTTCGCCGAGCGCTGCGAAGTCTTCAGCGACGGGGGCGAGGTCGGGTTCCGCTCCCAAACCGGCGTCGATTTGTCTCCGGTGCTGAATTCGTCGCAATGCGGCGGCGGCGGAGGATCGAAAACCAAGAGGACGCACAGCCTTGGGATGGTGAACGGGAGCATGAGTGTGGTTCACCAGCTCCACGCTATGGTCACCCGCAAGTGCATGAGAATCGACGCACGCGTGGTGTGCGTCGAGACGCCTAGGGTTGTGCTGCTGGTTGACGTGTACCTTCCTATTCACGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCGATTGCCGCCGCCGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGATTATTGTAGAAAGACTCATGGAGCAAATGAGAGTATTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATTCGCATGTTAGCAGTTCTTCAAGGAAAAGGCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGTGTTGGAAAACAGCGGATGTTTAATAGCTCGAAAATAATTCCTATGGATAACTCATCCAGATCAGGTATCTGGGAGATATCTGATGATATTTTAACTAAAATTTTATCTTCCCTAGACCCAATGGACCTCACCAGGGTTTCTGAAACATGTCATCATCTAAGATCATTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCAGTTCTCTCAACTGAAGATGGCCGTAGTTTCCACGTAAATACTGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGGGGAGGAATGTTTTGTGATGAGCCTGGATTGGGTAAGACTGTAACAACTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCGGATCCACCGGATGGGGCACAAGTTGTCTGGTGTAAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCAGCAGTAATAACATAACTGGTTGTTCTACATTGGGTAAAAGGGATGTGAGCCAAGATATCAGTAGAACTAGTGATAACCATGATTACTCCTCCAAAAGAGCCAGAAGGTCAAATCCTAATCAGCAAATCACTAAACTTCAGGGTTCATGTTCCATGGAAGTGAAGAAATCACCTGTAAAGGCATGCTTTAAGGAATCTATGCATTCAAATCAGTACACTAGGAGTTTGAGCCGGATAAAGAAAAATCTATGCTTCACATATGAAGATGAAGCTATGATTTCCAAGGAAAGAGAAATTGGTGAAGGATTAATTGAAGCAAAGCATGCATCAGATGTTGCACCTCATGTATCTCAAAAGAAGCTGCCTGGGAAGCCTGAAGGTGATCTTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGCAGACAATAGTATGGCTAGTTCTAGTGCAGCGTGGTTTTGTAGTATGAACACTGACCCTCTTTATGAAAGTTGTAGTGTCCCTGAACAACATTTTCATAATACCTCAAAGATAACACACTTGCCAGGGTTTCACTTAAAAGGAACTCATGGCGGTGAGAGACAAAATGTTTCTTTTTTCACCAGTGTGCTCAAGGAGCACCAGTCATTGATAAATTCTCAGACAAGGAGAGCCCTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGAATAAGAGGTCCCTTTTTAAACACATGTACTGCATCTAGTAGACATTTTAATGCGTTTCACAAAGTATTTCAAGCACTTGGCCTCTTAAAGAGAGTAGATAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTCAACAATTTGACTTTTGATGTGACTGCCCTTGGCATGGCACTCTGTGAGCCTTTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTCGTAGTTGTTCCTGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGATTTATGTTTGGACTGATCACCGGAAGCCATCTTTGCATTGTCTTGCGTGGGATTACGATGTTGTCTTAACCACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCTCGTAAGAAGAGTGTTTTGATGCAAGTGCATTGGTTTAGAGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCGAACACTCCTAACAGCCAACTTCCACATCTGCAACCATTGCTAAGGTTCCTTCATGAAGAGTCTTATGGACTGAATCAGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAAATGGAGGAAGGAAGGTCTCGTCTGTTACATCTACTTCACAAATGCATGATTAGTGCTAGAAAGGCAGATTTACAAAGCATTCCACCATGCATCAAGAAAATTGTTTATCTGGATTTTAATAAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACAGTACGACGTAATATATTGATGGCTGACTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGCAGGGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATATTAGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATTCCTCCATAAGATGTAATCTCTTGTACGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTTGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACCACACAAAGTGTACTTATCCTGGCTGCGGTAAATTATATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCGAAGTGGCCAGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCGGATTGGCAATCTACATCTAGTACTAAAGTCTCCTATCTTGTCCAGAAATTGAAAGCTTTGCAAGGAACCAATGAAGAGACCAGCTTCAGTAACAATGATGAGATGCCCATTGAGAATAGTTTCTCTCTGCATAGAGATGATAAATCAGCATTTCAGAAATGTTCGAAGAGCAGCACAAAGACCAATTTCAACCTCGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTACAGCCCTATGCATTCCAGCAACAAGAAGAAGTCTTTAGCCGTGTTCCAGCATGATTCAAGTTGTATGGCGCTCCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTCGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCACCGAATGGGTGCTTCTCGTCCTATTCACGTGGAAACACTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGAAGCTGATAAATGTAGAAGATCGCCAATTAAGGATGTTGCTGAATCTGAAGATGATGGTGGGGGACGAGGATATAAATCATTGCATGATTTTGCGGAAAGCAGTTATCTATTGAAACTTAGATCTGTGTATACTAATTCAGAAAGTCCAGAAGGTGTTTTGATTGATCAACATCAAGCAAGTACTAACTAA 3972 0.432 MSSDTSFADHKLCGFLCAVLTVSHRDSDPAFAERCEVFSDGGEVGFRSQTGVDLSPVLNSSQCGGGGGSKTKRTHSLGMVNGSMSVVHQLHAMVTRKCMRIDARVVCVETPRVVLLVDVYLPIHVWSGWQFPRSGAIAAAVFRHLSCDWDERSSMLSYPDYCRKTHGANESIWNLSDCHVLCCKLHSHVSSSSRKRLFELHELFKTLPGVGKQRMFNSSKIIPMDNSSRSGIWEISDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNAELLPHPLYAVLSTEDGRSFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTTLSLIMKTRGTLADPPDGAQVVWCKHNGNQKCGYYEISSNNITGCSTLGKRDVSQDISRTSDNHDYSSKRARRSNPNQQITKLQGSCSMEVKKSPVKACFKESMHSNQYTRSLSRIKKNLCFTYEDEAMISKEREIGEGLIEAKHASDVAPHVSQKKLPGKPEGDLFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNTDPLYESCSVPEQHFHNTSKITHLPGFHLKGTHGGERQNVSFFTSVLKEHQSLINSQTRRALTWLAKISTDKLAGMETNGIRGPFLNTCTASSRHFNAFHKVFQALGLLKRVDKGVCKWFYPQHLNNLTFDVTALGMALCEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSLHCLAWDYDVVLTTFSRLSAEWGPRKKSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKADLQSIPPCIKKIVYLDFNKEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDILVQSGLDPTSGEYSSIRCNLLYGGHCVRCKEWCRLPVITPCWHLLCLDCVSIDHTKCTYPGCGKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFSNNDEMPIENSFSLHRDDKSAFQKCSKSSTKTNFNLEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLAVFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLGFLQEADKCRRSPIKDVAESEDDGGGRGYKSLHDFAESSYLLKLRSVYTNSESPEGVLIDQHQASTN* 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00361 1323 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 670 835 IPR014001 -
Phac5g00361 1323 ProSiteProfiles Zinc finger CW-type profile. 517 568 IPR011124 GO:0008270
Phac5g00361 1323 CDD DEXDc_SHPRH-like 699 876 - -
Phac5g00361 1323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1131 1281 IPR001650 -
Phac5g00361 1323 Pfam CW-type Zinc Finger 522 565 IPR011124 GO:0008270
Phac5g00361 1323 SUPERFAMILY F-box domain 225 268 IPR036047 GO:0005515
Phac5g00361 1323 SMART fbox_2 235 275 IPR001810 GO:0005515
Phac5g00361 1323 MobiDBLite consensus disorder prediction 403 436 - -
Phac5g00361 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 359 IPR027417 -
Phac5g00361 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1289 IPR027417 -
Phac5g00361 1323 MobiDBLite consensus disorder prediction 405 421 - -
Phac5g00361 1323 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1261 - -
Phac5g00361 1323 Gene3D - 518 570 - -
Phac5g00361 1323 CDD SF2_C_SNF 1140 1245 - -
Phac5g00361 1323 MobiDBLite consensus disorder prediction 422 436 - -
Phac5g00361 1323 Gene3D - 1059 1297 IPR027417 -
Phac5g00361 1323 Pfam F-box domain 235 269 IPR001810 GO:0005515
Phac5g00361 1323 SMART helicmild6 1153 1235 IPR001650 -
Phac5g00361 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 874 IPR027417 -
Phac5g00361 1323 Pfam SNF2-related domain 280 921 IPR000330 GO:0005524|GO:0140658
Phac5g00361 1323 ProSitePatterns Zinc finger RING-type signature. 1013 1022 IPR017907 -
Phac5g00361 1323 Pfam Helicase conserved C-terminal domain 1138 1235 IPR001650 -
Phac5g00361 1323 SMART ultradead3 273 846 IPR014001 -
Phac5g00361 1323 CDD F-box_SF 234 266 - -
Phac5g00361 1323 Gene3D - 685 879 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00361 Phac-Chr5 3011093 3024522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00361 277 356 RAD5 or RAD16-like Gene Family AT5G22750 32.184 3.37e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac5g00361 SNF2_N 8.5e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00361 - - gmx:100803102 2333.91