Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00344 ATGGTTAGCTTCATCTCTTCACCAAAGGAAATGGGTGAAGCTCTGGAAGCTGAAGAAAGGCCCAAATTCAGAGATATCAGACGCTATTTCTGCGAGTTCTGCGGTATCTGCAGGTCCAAGAAAACCCTCATCACCTCTCACGTGAATTCACACCACAAGGAGGAGGTGGAAAAGGCAAGAGCTGAAAGAGAAAGAGAATCCGAATCTGAGGCTGTGAACTCCAACACGTGCGGGGAATGTGGTGCCAGTTTCAAAAAACACGCTTATTTGTTGCAGCACATGCAAAGTCATTCCCTTGAGAGGCCGTATGTGTGTGTTGTGGATGATTGTCAGGCAAGTTACCGAAGGAAGGATCACCTGAGTCGTCACCTTTTACAGCATCAAGGGAAGACTTTTAAATGCCCTGTTGAGAATTGCAGCACTGAATTCTCTTTGCAAAGCAATGTGAAACGACATGTTGAGGAGATCCATGATGACAGTTCTACCTCTACATGTGACAAAACTCACAAGCAGCACACATGTCCAGAAATTGGTTGTGGAAAGGTTTTCAAATTTGCATCACAGCTACGAAAACATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGATGTGGTGTGTTTAGAGCCTGGTTGCATGAAGCATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTAAAGTCCACCCATCAATACATGACCTGTGAAACTTGTGGTACTAAGCAACTAAAGAAGAATATTAAGCGTCACCTTCGTACGCACGAACCTATCAGTTCACCGGAGACCTTTCGATGTGACTTCAAGGGTTGCAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAAGAAGGTTGTTCACTTCAAGGAAAAGCCTTTTGTGTGTGGGTATGCTGATTGCGGCATGAGATTTGCTTACAAACATGTGCGAGATAACCATGAGAAAACCACAAAACATGTTTTTACCCTTGGTGATTTTGAAAAGGCTGATGAAGAGTTCAGGTCAAGATCTAGGGGAGGGAGGAAGAGGAAATGTCCTACTGTTGAAATGCTACTCAGAAACAGGGTTACTTCACCAAGTCAATTGGAGAGTTGGTTATTCATGGGGGATAGTGAGTAA 1119 0.4361 MVSFISSPKEMGEALEAEERPKFRDIRRYFCEFCGICRSKKTLITSHVNSHHKEEVEKARAERERESESEAVNSNTCGECGASFKKHAYLLQHMQSHSLERPYVCVVDDCQASYRRKDHLSRHLLQHQGKTFKCPVENCSTEFSLQSNVKRHVEEIHDDSSTSTCDKTHKQHTCPEIGCGKVFKFASQLRKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLQAHVKSTHQYMTCETCGTKQLKKNIKRHLRTHEPISSPETFRCDFKGCSCTFSRKSNLDKHKKVVHFKEKPFVCGYADCGMRFAYKHVRDNHEKTTKHVFTLGDFEKADEEFRSRSRGGRKRKCPTVEMLLRNRVTSPSQLESWLFMGDSE* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00344 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 292 IPR013087 -
Phac5g00344 372 Gene3D Classic Zinc Finger 170 254 - -
Phac5g00344 372 Gene3D Classic Zinc Finger 257 346 - -
Phac5g00344 372 SMART c2h2final6 262 287 IPR013087 -
Phac5g00344 372 SMART c2h2final6 293 319 IPR013087 -
Phac5g00344 372 SMART c2h2final6 172 196 IPR013087 -
Phac5g00344 372 SMART c2h2final6 29 51 IPR013087 -
Phac5g00344 372 SMART c2h2final6 132 157 IPR013087 -
Phac5g00344 372 SMART c2h2final6 75 97 IPR013087 -
Phac5g00344 372 SMART c2h2final6 103 127 IPR013087 -
Phac5g00344 372 SMART c2h2final6 232 253 IPR013087 -
Phac5g00344 372 SMART c2h2final6 204 229 IPR013087 -
Phac5g00344 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 132 IPR013087 -
Phac5g00344 372 ProSitePatterns Zinc finger C2H2 type domain signature. 264 287 IPR013087 -
Phac5g00344 372 ProSitePatterns Zinc finger C2H2 type domain signature. 134 157 IPR013087 -
Phac5g00344 372 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Phac5g00344 372 Gene3D Classic Zinc Finger 104 128 - -
Phac5g00344 372 Gene3D Classic Zinc Finger 15 103 - -
Phac5g00344 372 SUPERFAMILY beta-beta-alpha zinc fingers 244 301 IPR036236 -
Phac5g00344 372 ProSitePatterns Zinc finger C2H2 type domain signature. 105 127 IPR013087 -
Phac5g00344 372 SUPERFAMILY beta-beta-alpha zinc fingers 89 129 IPR036236 -
Phac5g00344 372 Pfam Zinc finger, C2H2 type 172 196 IPR013087 -
Phac5g00344 372 Pfam Zinc finger, C2H2 type 76 97 IPR013087 -
Phac5g00344 372 Pfam Zinc finger, C2H2 type 262 287 IPR013087 -
Phac5g00344 372 Pfam Zinc finger, C2H2 type 103 127 IPR013087 -
Phac5g00344 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 162 IPR013087 -
Phac5g00344 372 MobiDBLite consensus disorder prediction 49 69 - -
Phac5g00344 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Phac5g00344 372 Coils Coil 49 71 - -
Phac5g00344 372 ProSitePatterns Zinc finger C2H2 type domain signature. 295 319 IPR013087 -
Phac5g00344 372 SUPERFAMILY beta-beta-alpha zinc fingers 113 170 IPR036236 -
Phac5g00344 372 ProSitePatterns Zinc finger C2H2 type domain signature. 206 229 IPR013087 -
Phac5g00344 372 ProSitePatterns Zinc finger C2H2 type domain signature. 174 196 IPR013087 -
Phac5g00344 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 201 IPR013087 -
Phac5g00344 372 Gene3D Classic Zinc Finger 129 169 - -
Phac5g00344 372 PANTHER ZINC FINGER PROTEIN 10 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00344 Phac-Chr5 2832608 2835832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00344 99 322 C2H2 Transcription Factor Family AT1G72050 50.362 4.17e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g00344 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00344 K09191 - gmx:100801812 605.52