Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00302 ATGTTTTCCTGCGCCTGTTGTTTGAACTTCAAGTTTTGTTTTTTGATGTCTAAGTTCATCTTCTCGAGAGCTAACCGAAGCATGTGCCGTGGTCCAGAGAAATCAAAATCTCTTTCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAAAGCCAAAGACATGAAAGATTTAACTGTTTGTGCTGAAGATTCTTTTTCCTGCCTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGTGATATTTCTCTAATAAACAAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTCTGGATGTTCTAAAACTTATACTCTCGTGGCCGGGGGCTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTCCATTGTGCTGCGTCAGGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCATCTGGTGCTGACATCAGATGTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTCTGAAAGCAACTCTTGAGGATCTACTTTCAGATAGTGTGTGTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTTAATTCACCGTGTTCTGATTCAGCGACTCATTTTTTATCACTTGAAAATGGGTTGCCATCCTCTCCTATGGCTTCCAAGTTCACTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGGGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAGGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGTTCAACTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGCCATGTCTCCATCTCCCTTCGCTCAGCCAATGTCTCCATCTACAAGTGGCATTAGTCACTCATCTATTGCTTGGCCACAACCGAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGGAGACCTGGATGTGTTGCAAGATTTTAATGGTCAGCAACACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATCTATTTTCTCCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCTTCTCCTAGGAATATTGAGCATCCTCTTTTACAGGCTTCATTTGGTGTCTCTTCTCCGGGAAGAATGTCCCCAAGAAGTTTGGAACCAATCTCTCCAATGAGTGCTCGATTATCTGCATTTTCACAGCGTGACAAGCAGCAGCAGCTGCGTAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTGGGGTCCCCAGTTAACTCCTGGTCGAATTGGGGTTCTCCTCATGGGAATGCAAAGGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTGCAGTCCCTTGTGAAGGAATCTCCATCCGAGTTAAAAGAGAAGTTGGCAGGTTCTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2250 0.4444 MFSCACCLNFKFCFLMSKFIFSRANRSMCRGPEKSKSLSTPSSSAVEGSTKAKDMKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINKVGLWYVRQIGSKQIVLEHRTPLMVASMYGSLDVLKLILSWPGADVNFSCGTDRSTALHCAASGGSVNAVDVVKLLLSSGADIRCVDANGNRPVDVIVVPPKLEGLKATLEDLLSDSVCDGSVGDCFIPVSVNSPCSDSATHFLSLENGLPSSPMASKFTDTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSTASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQPMSPSTSGISHSSIAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPGDLDVLQDFNGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDLFSPEISSSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNIEHPLLQASFGVSSPGRMSPRSLEPISPMSARLSAFSQRDKQQQLRSLSSRDLGAHNPVSIVGSPVNSWSNWGSPHGNAKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSELKEKLAGSGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00302 749 MobiDBLite consensus disorder prediction 615 638 - -
Phac5g00302 749 Pfam CCCH-type zinc finger 329 349 IPR041367 -
Phac5g00302 749 SUPERFAMILY Ankyrin repeat 57 191 IPR036770 -
Phac5g00302 749 PANTHER UNKEMPT FAMILY MEMBER 71 701 IPR045234 -
Phac5g00302 749 SMART ANK_2a 111 141 IPR002110 GO:0005515
Phac5g00302 749 SMART ANK_2a 146 178 IPR002110 GO:0005515
Phac5g00302 749 Gene3D - 325 387 - -
Phac5g00302 749 MobiDBLite consensus disorder prediction 31 50 - -
Phac5g00302 749 ProSiteProfiles Ankyrin repeat profile. 146 181 IPR002110 GO:0005515
Phac5g00302 749 MobiDBLite consensus disorder prediction 32 49 - -
Phac5g00302 749 FunFam Zinc finger CCCH domain-containing protein 66 282 350 - -
Phac5g00302 749 Pfam Ankyrin repeats (3 copies) 96 178 IPR002110 GO:0005515
Phac5g00302 749 SMART c3hfinal6 324 350 IPR000571 GO:0046872
Phac5g00302 749 SMART c3hfinal6 359 382 IPR000571 GO:0046872
Phac5g00302 749 ProSiteProfiles Ankyrin repeat region circular profile. 146 180 - -
Phac5g00302 749 MobiDBLite consensus disorder prediction 615 635 - -
Phac5g00302 749 Gene3D - 52 204 IPR036770 -
Phac5g00302 749 ProSiteProfiles Zinc finger C3H1-type profile. 329 351 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00302 Phac-Chr5 2494040 2497562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00302 42 746 C2H2 Transcription Factor Family AT5G12850 54.772 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac5g00302 Ank_2 6.1e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00302 - - gmx:100792574 1263.44