Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00301 ATGAAAGATTTAACTGTTTGTGCTGAAGATTCTTTTTCCTGCCTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGTGATATTTCTCTAATAAACAAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTCTGGATGTTCTAAAACTTATACTCTCGTGGCCGGGGGCTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTCCATTGTGCTGCGTCAGGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCATCTGGTGCTGACATCAGATGTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTCTGAAAGCAACTCTTGAGGATCTACTTTCAGATAGTGTGTGTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTTAATTCACCGTGTTCTGATTCAGCGACTCATTTTTTATCACTTGAAAATGGGTTGCCATCCTCTCCTATGGCTTCCAAGTTCACTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGGGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAGGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGTTCAACTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGCCATGTCTCCATCTCCCTTCGCTCAGCCAATGTCTCCATCTACAAGTGGCATTAGTCACTCATCTATTGCTTGGCCACAACCGAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGGAGACCTGGATGTGTTGCAAGATTTTAATGGTCAGCAACACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATCTATTTTCTCCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCTTCTCCTAGGAATATTGAGCATCCTCTTTTACAGGCTTCATTTGGTGTCTCTTCTCCGGGAAGAATGTCCCCAAGAAGTTTGGAACCAATCTCTCCAATGAGTGCTCGATTATCTGCATTTTCACAGCGTGACAAGCAGCAGCAGCTGCGTAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTGGGGTCCCCAGTTAACTCCTGGTCGAATTGGGGTTCTCCTCATGGGAATGCAAAGGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTGCAGTCCCTTGTGAAGGAATCTCCATCCGAGTTAAAAGAGAAGTTGGCAGGTTCTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2088 0.4473 MKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINKVGLWYVRQIGSKQIVLEHRTPLMVASMYGSLDVLKLILSWPGADVNFSCGTDRSTALHCAASGGSVNAVDVVKLLLSSGADIRCVDANGNRPVDVIVVPPKLEGLKATLEDLLSDSVCDGSVGDCFIPVSVNSPCSDSATHFLSLENGLPSSPMASKFTDTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSTASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQPMSPSTSGISHSSIAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPGDLDVLQDFNGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDLFSPEISSSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNIEHPLLQASFGVSSPGRMSPRSLEPISPMSARLSAFSQRDKQQQLRSLSSRDLGAHNPVSIVGSPVNSWSNWGSPHGNAKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSELKEKLAGSGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00301 695 Gene3D - 271 333 - -
Phac5g00301 695 Pfam Ankyrin repeats (3 copies) 42 124 IPR002110 GO:0005515
Phac5g00301 695 MobiDBLite consensus disorder prediction 561 581 - -
Phac5g00301 695 PANTHER UNKEMPT FAMILY MEMBER 17 647 IPR045234 -
Phac5g00301 695 SUPERFAMILY Ankyrin repeat 6 137 IPR036770 -
Phac5g00301 695 Gene3D - 2 150 IPR036770 -
Phac5g00301 695 Pfam CCCH-type zinc finger 275 295 IPR041367 -
Phac5g00301 695 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Phac5g00301 695 MobiDBLite consensus disorder prediction 561 584 - -
Phac5g00301 695 SMART ANK_2a 57 87 IPR002110 GO:0005515
Phac5g00301 695 SMART ANK_2a 92 124 IPR002110 GO:0005515
Phac5g00301 695 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Phac5g00301 695 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Phac5g00301 695 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Phac5g00301 695 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Phac5g00301 695 SMART c3hfinal6 270 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00301 Phac-Chr5 2493235 2498065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00301 9 692 C2H2 Transcription Factor Family AT5G12850 55.413 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac5g00301 Ank_2 5.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00301 - - gmx:100813725 1233.78