Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00300 ATGTGCCGTGGTCCAGAGAAATCAAAATCTCTTTCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAAAGCCAAAGACATGAAAGATTTAACTGTTTGTGCTGAAGATTCTTTTTCCTGCCTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGTGATATTTCTCTAATAAACAAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTCTGGATGTTCTAAAACTTATACTCTCGTGGCCGGGGGCTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTCCATTGTGCTGCGTCAGGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCATCTGGTGCTGACATCAGATGTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTCTGAAAGCAACTCTTGAGGATCTACTTTCAGATAGTGTGTGTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTTAATTCACCGTGTTCTGATTCAGCGACTCATTTTTTATCACTTGAAAATGGGTTGCCATCCTCTCCTATGGCTTCCAAGTTCACTGATACAGCTGTTAATTCTGCTTCTGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGGGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAGGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGTTCAACTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGCCATGTCTCCATCTCCCTTCGCTCAGCCAATGTCTCCATCTACAAGTGGCATTAGTCACTCATCTATTGCTTGGCCACAACCGAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGGAGACCTGGATGTGTTGCAAGATTTTAATGGTCAGCAACACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATCTATTTTCTCCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCTTCTCCTAGGAATATTGAGCATCCTCTTTTACAGGCTTCATTTGGTGTCTCTTCTCCGGGAAGAATGTCCCCAAGAAGTTTGGAACCAATCTCTCCAATGAGTGCTCGATTATCTGCATTTTCACAGCGTGACAAGCAGCAGCAGCTGCGTAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTGGGGTCCCCAGTTAACTCCTGGTCGAATTGGGGTTCTCCTCATGGGAATGCAAAGGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTGCAGTCCCTTGTGAAGGAATCTCCATCCGAGTTAAAAGAGAAGTTGGCAGGTTCTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2169 0.4463 MCRGPEKSKSLSTPSSSAVEGSTKAKDMKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINKVGLWYVRQIGSKQIVLEHRTPLMVASMYGSLDVLKLILSWPGADVNFSCGTDRSTALHCAASGGSVNAVDVVKLLLSSGADIRCVDANGNRPVDVIVVPPKLEGLKATLEDLLSDSVCDGSVGDCFIPVSVNSPCSDSATHFLSLENGLPSSPMASKFTDTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSTASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQPMSPSTSGISHSSIAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPGDLDVLQDFNGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDLFSPEISSSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNIEHPLLQASFGVSSPGRMSPRSLEPISPMSARLSAFSQRDKQQQLRSLSSRDLGAHNPVSIVGSPVNSWSNWGSPHGNAKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSELKEKLAGSGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00300 722 SUPERFAMILY Ankyrin repeat 30 164 IPR036770 -
Phac5g00300 722 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Phac5g00300 722 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Phac5g00300 722 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Phac5g00300 722 SMART ANK_2a 119 151 IPR002110 GO:0005515
Phac5g00300 722 SMART ANK_2a 84 114 IPR002110 GO:0005515
Phac5g00300 722 PANTHER UNKEMPT FAMILY MEMBER 44 674 IPR045234 -
Phac5g00300 722 Gene3D - 25 177 IPR036770 -
Phac5g00300 722 Pfam CCCH-type zinc finger 302 322 IPR041367 -
Phac5g00300 722 Gene3D - 298 360 - -
Phac5g00300 722 MobiDBLite consensus disorder prediction 588 608 - -
Phac5g00300 722 MobiDBLite consensus disorder prediction 588 611 - -
Phac5g00300 722 Pfam Ankyrin repeats (3 copies) 69 151 IPR002110 GO:0005515
Phac5g00300 722 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Phac5g00300 722 MobiDBLite consensus disorder prediction 8 22 - -
Phac5g00300 722 MobiDBLite consensus disorder prediction 1 23 - -
Phac5g00300 722 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Phac5g00300 722 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00300 Phac-Chr5 2493235 2498065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00300 20 719 C2H2 Transcription Factor Family AT5G12850 54.875 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac5g00300 Ank_2 5.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00300 - - gmx:100792574 1263.44