Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00278 ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCTCTTTATTCTCACCACTCTTCTTTCACTTCTCAACCAAACCTTTTCTCTTCCTACCCTCTTTCACACTCAAACACCACCAACACAGCTCCTCCTTCTCCACCCCTCAGAGAAGCCCTTCCTCTCATAAGCCTCATAAAGCAGAAGGAGAACAAGAGCTCCAACGGTGGTGGAGAAGCTGAAGAGGAAGGGCACAATAGAAGAGACATGGATGAGACCCTTTTGAGTGAAGATGGTGGTGATGAAAGTGTAGCAGTAGCACTGCACATAGGGCTACCTAGAGTGGATGCTTCTGATCTTCTTGGATCAGGGAAGATCTCAGCAGAAATGGGTGAGAAAGGGGAAGTGAGTGTGATTTCTGGACACCCTTTGGAGAGATTAAACAAGGTTCAGTATTGGATTCCAACCCCTTCCCAGATTCTTATTGGTCCTACTCAGTTCTTATGTTCTGTCTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCAGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGAGGACACATGAGAAGAACTGTGGGAAAATATGGTACTGTTTATGTGGCTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCATGGAGCTGTTCACATTGATTGCATGCAGGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGGGATAGCTCAATGTGA 972 0.4424 MTDPHSNLYAGTFNFMPLYSHHSSFTSQPNLFSSYPLSHSNTTNTAPPSPPLREALPLISLIKQKENKSSNGGGEAEEEGHNRRDMDETLLSEDGGDESVAVALHIGLPRVDASDLLGSGKISAEMGEKGEVSVISGHPLERLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVHIDCMQEDEAASEIEHDGDSSM* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00278 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Phac5g00278 323 PANTHER ZINC FINGER PROTEIN WIP2 20 316 IPR043584 GO:0003700|GO:0010468
Phac5g00278 323 SUPERFAMILY beta-beta-alpha zinc fingers 157 185 IPR036236 -
Phac5g00278 323 SUPERFAMILY beta-beta-alpha zinc fingers 231 267 IPR036236 -
Phac5g00278 323 Gene3D Classic Zinc Finger 162 185 - -
Phac5g00278 323 Pfam C2H2-type zinc finger 163 182 - -
Phac5g00278 323 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Phac5g00278 323 MobiDBLite consensus disorder prediction 64 84 - -
Phac5g00278 323 Gene3D Classic Zinc Finger 225 299 - -
Phac5g00278 323 SMART c2h2final6 163 185 IPR013087 -
Phac5g00278 323 SMART c2h2final6 247 267 IPR013087 -
Phac5g00278 323 SMART c2h2final6 273 296 IPR013087 -
Phac5g00278 323 MobiDBLite consensus disorder prediction 70 84 - -
Phac5g00278 323 FunFam Zinc finger protein WIP2 216 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00278 Phac-Chr5 2286024 2288291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00278 18 316 C2H2 Transcription Factor Family AT1G51220 55.556 1.49e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g00278 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00278 - - vra:106761045 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g00278 5 2286024 2288291 Phac5g00278 5 2286024 2288291 ECH