LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g00269	ATGGCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAGTGTGCTTTTGTTCATGAGAAAAAGGATGAGGATAGTGGTCATGTTTGTTGCTTTCATAGAAAAGGAGTATGTGCTTTTGGTAGTAGATGCAAATATAAACATGTCAGAGCTTCTGATGGGTCGTCTTCATCAAACAGACGTCGTTCTCCTCTTCCGAAGTGTTTGCTGAATGTCAAAGAAACAAGTTGGGTTCCAAAGGGTTCAAAGTCATCTTCATCAGACAATTGTGCAAGGAGTTCACAACATAAGAATCTGCTCTCTCCTGGAAATGATGTTGGCAGTTCTAGTAGTGCTGCACGATCTGAAATTTTGTTCTGCTCATTTGCTGCTGCCGACTGCCCCCTTGGAATTAACTGTTCTCGTGTTCATGGAAATCGATGTTTATACTGTAGAGAATTTTGCTTACATCCTACTGACAGAGAGAAAAAAGAAAATCATTTGAGAACTTGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAATGACAGTCGAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAGGCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGATCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAGTAGTGCCCCAACCTCTGGAATGGACATGGGTAGTAGTAGTGGCACTGCTAATGCAGTGAGAACATGTCCTGTTTGTCGCAAACTGTCATATTTTGTCATTCCGAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAATTGCAAACTAATTAATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTCTACAAGCACACTGTGAAGCCTGGCTCATACACATGGATCCATGGCAGGCCACCACCACACCGGAGACAAAACAATCTTACGATGAATGACATGAATGACATGTTGGAGATGCTCAGCGATGTTGATTTAACAAATTCTATTATGAGGGACTCAGGGTTTTTCGATGATATGGATCCATTTGGGATGATGGATATCTCTGATAGTCTTGGTGGTGAATCAGGTCCTTGTTTTGGCCCTTTTGATTCTGATGAAGAAGACACAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGCCCGGAAGATTTTGTGGATGAAGAGTTCAACCCTATGGAGGCTGCGTTGTTATCAATGATGATGCATTCTAATATAGATGATGATGATGATGAAGAGGAATACAGTGATGAGTTCTACTAG	1350	0.4119	MANRVCKFYARGACLKGDQCAFVHEKKDEDSGHVCCFHRKGVCAFGSRCKYKHVRASDGSSSSNRRRSPLPKCLLNVKETSWVPKGSKSSSSDNCARSSQHKNLLSPGNDVGSSSSAARSEILFCSFAAADCPLGINCSRVHGNRCLYCREFCLHPTDREKKENHLRTCEKKEKYLQALNDSREVECNVCLERVLSKAKPSDCKFGLLPECDHAFCLSCIRNWRSSAPTSGMDMGSSSGTANAVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLINCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHGRPPPHRRQNNLTMNDMNDMLEMLSDVDLTNSIMRDSGFFDDMDPFGMMDISDSLGGESGPCFGPFDSDEEDTDFFQMAALSEALVSGVDDFGPEDFVDEEFNPMEAALLSMMMHSNIDDDDDEEEYSDEFY*	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g00269	449	ProSiteProfiles	Zinc finger RING-type profile.	187	251	IPR001841	-
	Phac5g00269	449	SMART	c3hfinal6	30	55	IPR000571	GO:0046872
	Phac5g00269	449	SMART	c3hfinal6	280	308	IPR000571	GO:0046872
	Phac5g00269	449	SMART	c3hfinal6	2	26	IPR000571	GO:0046872
	Phac5g00269	449	SUPERFAMILY	RING/U-box	179	257	-	-
	Phac5g00269	449	SMART	ring_2	187	250	IPR001841	-
	Phac5g00269	449	MobiDBLite	consensus disorder prediction	83	110	-	-
	Phac5g00269	449	Gene3D	-	1	68	-	-
	Phac5g00269	449	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	159	287	IPR013083	-
	Phac5g00269	449	Pfam	Zinc finger, C3HC4 type (RING finger)	187	250	IPR018957	GO:0046872
	Phac5g00269	449	ProSiteProfiles	Zinc finger C3H1-type profile.	34	56	IPR000571	GO:0046872
	Phac5g00269	449	ProSiteProfiles	Zinc finger C3H1-type profile.	280	309	IPR000571	GO:0046872
	Phac5g00269	449	SUPERFAMILY	CCCH zinc finger	3	25	IPR036855	GO:0046872
	Phac5g00269	449	CDD	RING-HC_MKRN	185	251	-	-
	Phac5g00269	449	ProSiteProfiles	Zinc finger C3H1-type profile.	1	27	IPR000571	GO:0046872
	Phac5g00269	449	PANTHER	MAKORIN-RELATED	4	365	IPR045072	GO:0000209\|GO:0061630
	Phac5g00269	449	ProSitePatterns	Zinc finger RING-type signature.	211	220	IPR017907	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g00269	Phac-Chr5	2244728	2251861	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Phac5g00269		zf-C3HC4	6.4e-07	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g00269	K15687		-	gmx:100788886	667.151