Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00235 ATGTTCGCGGCGTCTCCGCCGCCCTCCGCCACCGTCACCACTACTGCCGCCGTTGGTCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCTCCATCATGCTCGCCTCCTACGCCTGCGTCCGCTTCAAATCAAACTCGCCTCGCTCTCGTCACAACACTTATTACAACCAAACGGAACAAAATAACAGCATTCACGACTCCGGTGGGCTCGGGCCCGTCGTCCTGGGCCTGGAAAAGCCCGCCATCGAGGCCTACCCGAAGATCGTGGTCGGAGAGAGCGTCCGCCTCCCCAGGCCCGACAGTGGCCCCTGCGCCATCTGCCTCTGCGAGTACCTTCCCAAGGACACCGTTCGCTGCGTTCCGAGCTGCCACCACTGCTTCCACGCGGACTGCGTGGACGTGTGGCTGAAGATGAGTGCCACGTGTCCGCTCTGCCGGAACTCTCCGGTGCCTTCGCCGTTGCCGTCACCGTCACCGACGCCACTGTCGGAGCTCGTTCCGCTGGCTTTCCACGGCAGGTGA 537 0.635 MFAASPPPSATVTTTAAVGLGYGIAIAVSILVLISSIMLASYACVRFKSNSPRSRHNTYYNQTEQNNSIHDSGGLGPVVLGLEKPAIEAYPKIVVGESVRLPRPDSGPCAICLCEYLPKDTVRCVPSCHHCFHADCVDVWLKMSATCPLCRNSPVPSPLPSPSPTPLSELVPLAFHGR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00235 178 PANTHER RING-H2 FINGER PROTEIN ATL67 10 174 IPR044289 GO:0016567|GO:0016740
Phac5g00235 178 CDD RING-H2_EL5-like 109 151 - -
Phac5g00235 178 SUPERFAMILY RING/U-box 108 156 - -
Phac5g00235 178 Pfam Ring finger domain 109 151 IPR001841 -
Phac5g00235 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 156 IPR013083 -
Phac5g00235 178 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Phac5g00235 178 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00235 Phac-Chr5 1883163 1883937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00235 16 178 C3H Transcription Factor Family AT5G07040 58.282 6.01e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00235 - - vra:106761828 278.1