Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00223 ATGAACTTGTCGCCAATTCGCAATCACAGCGGCAAGGAGACTTGTCTGGACAAGGTTGCTTCGCCAACTCTCAAGGTGCCGTTGAGCTTCAAGAGGATAACCTCGGCCCCTGATGTGATTGGACAGAGTCCCTTCAGAACTCCACCGTCTCTGTCTTATCGCCCTGACAAGGTGCAGCGTGGCAAGGATATTGAACACAAGGGACCGTGCGACCAACCTTTATTAAGACAGAACAAAAAGGCATTGCTTGAACTCTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGCTCCAGTTTGCCACAGCAACACTTATTCCTTTGAAGTACCTCAAAATCAAGCTAATGAGCTCCCTGTCAAAGTCAAACCTGCAGTAGAAAGGACCAAATCACATTTACCTAAAGAGGTTGTTGATGTCTTCACCAATTCTAATTATTTGGTTCTGGAGGTATCTGAACATAGGTCTGCTGATTCAAATGCTGCTCAATGCTCATACAAGGTGCTACGTTTGCTAAGTGAACAAACTGGGGAAGAGCGGGCTGTAAACTTACAGAATGAGTGGTACTGTAGTGTAATTGCACCTGGAGATACTGTGCACGTAATTGGTGAATTTGATGAAGGGGGGAATTGTGAAATTGATCATGATAACAATTTTTTGATTGTACACCCAGATATTCTATTGTCTGGAACTCGGGTTTCTTCCAGTTTTAATTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTGAAAAACAATGATTACTCAACTGCAGCATTAGCTGGAACAATGCTGCACCAAATTTTCCAGGCTGGGCTTACAAAAGACCATCCTACAGTAAATTTCATGGAAGATTATGCTGAAGTGGTATTGCAGAAAAACATTGAAAGTTTGTATGCATGTGGAGTTAATGAAAACGACGTTCGCAAAACCATGAGAGATGCTATTCCTAGAATATTAAGTTGGATCATGCGGTTTAAAAATACGGAGGAAAGAAAAGACCCGAATGTCCAATTTGGATTTGATAATGGGCCAAAGAATGTTAGCATATCTGAGGTAATTGATATTGAAGAGATGGTGTGGGCTCCAAAATATGGTTTAAAAGGGATGATTGATGCTTCGGTCAGAGTGAAAATTCAATCACAAAAAGATCAACAGGAGGAAAAGATTATGCCATTAGAGTTCAAAACTGGAAAAACACCAAATAGCCAGTCATCAGTTGAACACAGTGCCCAAGTAATTTTGTACTCTCTCTTGATGTCTGAAAGGTATCAGACAACTGTTGATTCTGGTCTTCTATATTATCTTCAATCTGATCAGACACAGGGCATCGTGGTTCAAAGATCTGACCTAACTGGGCTAATAATGCAACGAAATGAACTAGCAAGTTATATTCTTAAGGCATTGAGTCTACAACAACTTCCTCCAATGTTACAGATTCCTCACATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGTGTTTATCACAAGGCAAATGGTGGAAGCACAGAGAGCAGTGGGTTGGGAGAGGTTTTTGATTCTCTTACTAATCACATGACTACTTCACATTTTAAGTTTCTCCGCCAATGGGATCGATTGATTGACTTAGAAGCTAAAGAGACTGAGATTTTAAGGAAAGAGGTGTGGCAATCACATAGTTCAAACAATAGTGGTCTTTCTTCTATTGTTCTTGATGACTCACTAGGAATACCTCTTGAGAAATCTTTCAAAGATGACCAATTCACTTATCGTTTCATACAACAAGATTCTTCTTCTAACCTCTCTGAAGTTTCTAATGTGTCTTCTAGTGCCCCATTGAAAAACCATTTAGATTTCACACTTCGAAGTGGAGATCATGTGATACTGGGTAATCAATCTAGCCATCAAATTATTGCTAAAGGGGTGATATCTGATATTAGTCCGATCCATGTATCTGTTTCCTTTCCTAAGCGTTTACGAATTCCCGGGAGTTCTTCCACAGCACATGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGCAGCTGTGACTTCCTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCGAAGTGCTCATTTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAGTGGATCTGTACTTAGTCAGGATCCTGCGATATCCTATGTTTGGTCAGAGAAGAGTTTGAATTACGACCAACGTAGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACGTCCACATTAGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGGACATCCATTTTGCTAACAGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTACGAATTGGAAGACACGAAGTAGTGAATGAGGTGGTCAGAGAACACTGCCTCTCAGCAATGAGTGTACAAGGTGTTGAAGATATCAAAAGAAGGTTGGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTGCCAACACAAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTTTACCAGTGTCCTTGGGTCCTCTAACGTTTGCTTCGATGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAGAGTACAGAAGCCCGAGAGAATGGCATGGGGGTAAGTTTGTTCCGTAGGCTCTCAGAAGCACATCCGCAGGCTATTTTAGCCTTACAGAGTCAGTATCGTATGTGTCAGGAGATTATGGACCTTTCAAATGCCTTGATATATGGTGATAGATTGAGGTGTGGTTCAGTTGAGGTAGCTAATGCAAAACTTGAGTTTTCAGACTTAAGCTGTGACTTGCCTTGGCTAGAACATGTTTTGAATCCTCGAAGACCTGTTATATTTATTGATACTGACAAGTTGCCCGCATTAGAGGCAAGAGATCACAAGCTTGTAAATAATCCTATTGAAGCTCAGATAATTGCTGAGATTGCAAAAGAATTAGTTAAAAATGGAATTGGAGAAGAACAGATTGGCATTATCACTCCATATAATTCACAGGCAAACCTCATTCGTCGTGCTGTTTGCATGACATCCTTGGAGATACATACCATTGACAAATATCAGGGTAGAGATAAAGACTGTGTGTTATTATCTTTTGTAAGGTCTACCGAAAATCCAAAAAGCTATGCTGCGTCTCTGCTTGGAGATTGGCACAGGATGAATGTGGCTCTTACTCGTGCTAAGAAAAAGTTGATAATGGTAGGGTCTAGGAGAACTCTATCAAAGATTCCTTTACTGAAACTTCTTATTGGCAAAGTTGAGGAGCAGTCTGGAATTTTAAGTGTTTCTCATAAGGATATGTATAGAAAAGGTGAGCTCAAGAGATGTTCTCAACTGAGATGA 3459 0.4042 MNLSPIRNHSGKETCLDKVASPTLKVPLSFKRITSAPDVIGQSPFRTPPSLSYRPDKVQRGKDIEHKGPCDQPLLRQNKKALLELLDQVEDAIAVDDAPVCHSNTYSFEVPQNQANELPVKVKPAVERTKSHLPKEVVDVFTNSNYLVLEVSEHRSADSNAAQCSYKVLRLLSEQTGEERAVNLQNEWYCSVIAPGDTVHVIGEFDEGGNCEIDHDNNFLIVHPDILLSGTRVSSSFNCPRRTVLDERLKNNDYSTAALAGTMLHQIFQAGLTKDHPTVNFMEDYAEVVLQKNIESLYACGVNENDVRKTMRDAIPRILSWIMRFKNTEERKDPNVQFGFDNGPKNVSISEVIDIEEMVWAPKYGLKGMIDASVRVKIQSQKDQQEEKIMPLEFKTGKTPNSQSSVEHSAQVILYSLLMSERYQTTVDSGLLYYLQSDQTQGIVVQRSDLTGLIMQRNELASYILKALSLQQLPPMLQIPHICRGCRHLNVCSVYHKANGGSTESSGLGEVFDSLTNHMTTSHFKFLRQWDRLIDLEAKETEILRKEVWQSHSSNNSGLSSIVLDDSLGIPLEKSFKDDQFTYRFIQQDSSSNLSEVSNVSSSAPLKNHLDFTLRSGDHVILGNQSSHQIIAKGVISDISPIHVSVSFPKRLRIPGSSSTAHDLIQQVWRIDKDAAVTSFAIMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDSGSVLSQDPAISYVWSEKSLNYDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEVVNEVVREHCLSAMSVQGVEDIKRRLEQVKVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSTEARENGMGVSLFRRLSEAHPQAILALQSQYRMCQEIMDLSNALIYGDRLRCGSVEVANAKLEFSDLSCDLPWLEHVLNPRRPVIFIDTDKLPALEARDHKLVNNPIEAQIIAEIAKELVKNGIGEEQIGIITPYNSQANLIRRAVCMTSLEIHTIDKYQGRDKDCVLLSFVRSTENPKSYAASLLGDWHRMNVALTRAKKKLIMVGSRRTLSKIPLLKLLIGKVEEQSGILSVSHKDMYRKGELKRCSQLR* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00223 1152 CDD DNA2_N-like 229 464 - -
Phac5g00223 1152 Pfam DNA replication factor Dna2 174 376 IPR014808 -
Phac5g00223 1152 PANTHER DNA2/NAM7 HELICASE FAMILY 171 1123 IPR045055 -
Phac5g00223 1152 Gene3D - 832 930 IPR027417 -
Phac5g00223 1152 Gene3D - 675 825 IPR027417 -
Phac5g00223 1152 CDD SF1_C_Upf1 933 1122 IPR047187 -
Phac5g00223 1152 FunFam DNA replication helicase Dna2 337 493 - -
Phac5g00223 1152 Gene3D - 612 674 - -
Phac5g00223 1152 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 675 824 - -
Phac5g00223 1152 Pfam AAA domain 833 900 IPR041677 GO:0004386
Phac5g00223 1152 Pfam AAA domain 733 824 IPR041677 GO:0004386
Phac5g00223 1152 FunFam DNA replication helicase 931 1144 - -
Phac5g00223 1152 Gene3D - 931 1139 IPR027417 -
Phac5g00223 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 1117 IPR027417 -
Phac5g00223 1152 FunFam DNA2-like helicase 612 674 - -
Phac5g00223 1152 CDD DEXXQc_DNA2 732 932 IPR026851 GO:0017116
Phac5g00223 1152 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 829 930 - -
Phac5g00223 1152 Pfam Domain of unknown function DUF83 382 493 IPR022765 -
Phac5g00223 1152 Gene3D - 229 493 IPR011604 -
Phac5g00223 1152 Pfam AAA domain 909 1109 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00223 Phac-Chr5 1819462 1835984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00223 22 874 Core DNA Replication Machinery Family AT1G08840 58.238 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00223 K10742 - gmx:100799415 1875.52