Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00222 ATGATTAGCTTCATTCACACAGAAACTGAAATGGCTTCTGCAAGTAACTCCAATCCAAATCCATATCCATGGACCCCTAAGGATTGTTCTCAAGGGATCTGCAGCATCTACTGTCCCCAGTGGTGTTACATAGTCTACTCTCCTCCCCCTCCTTCACTCTTCCTTGGTGGTGATGCTGATGATGACCCTTCAGCCTTTCAGTTCTCACCTCTCATAGTTGCTGTGATTGGAATATTAGCCAGCACTTTCATCTTGGTCACATACTACACCATCATCTCAAGGTTCTGCAGGAGAAGAAGCATGCACTCCAATGATCTAGCAGAAGATGGGAGCAGTGAACTGGCTCAGGTTTCTTCTTCTTCTAACTCTGGTTTGGATGAGGCTCTCATCAAGTCCATCACAGTTTGCAAGTACACCAAAGGGGGAGGGGTGGTGGAGGGTCATGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAGAATGAGAGCTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATACTTGGCTCAAATCTCATGCCTCTTGCCCCTTGTGCCGTTCCACCATCACCATTGTTTGTCCAAATCCAGCCATGGAACCACCACCAAGAGTCATTGTCAATGCCTTGGAATATCAGCAAAGAAGTAGCCATGTTGTTGTTGTGGTTGCTCAGAGCTCTGAGCAACAGGGGAAGGTGGTAACTTTTGATTCTCACACTTTGAATCAGAGTGAAGGGTGA 756 0.459 MISFIHTETEMASASNSNPNPYPWTPKDCSQGICSIYCPQWCYIVYSPPPPSLFLGGDADDDPSAFQFSPLIVAVIGILASTFILVTYYTIISRFCRRRSMHSNDLAEDGSSELAQVSSSSNSGLDEALIKSITVCKYTKGGGVVEGHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHASCPLCRSTITIVCPNPAMEPPPRVIVNALEYQQRSSHVVVVVAQSSEQQGKVVTFDSHTLNQSEG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00222 251 SMART ring_2 150 191 IPR001841 -
Phac5g00222 251 CDD RING-H2_EL5-like 149 192 - -
Phac5g00222 251 PANTHER RING-H2 FINGER PROTEIN ATL16 63 229 IPR044600 GO:0016567|GO:0016740
Phac5g00222 251 SUPERFAMILY RING/U-box 144 201 - -
Phac5g00222 251 Pfam Ring finger domain 149 192 IPR001841 -
Phac5g00222 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 197 IPR013083 -
Phac5g00222 251 FunFam RING-H2 finger protein ATL54 125 198 - -
Phac5g00222 251 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00222 Phac-Chr5 1816141 1817979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00222 14 195 C3H Transcription Factor Family AT3G03550 55.340 6.48e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00222 - - vun:114168871 404.445