Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00212 ATGGCATCCTCACATAATTTGAAAGATTATTCCTCTGAAGTCTCTAGCACCTCACAAGACATTTGTCATAAAGAAGAAGGAAAGAAGGTTGAGGTGACAACAATGAAGGATAAAAGTATCAAATTTGAAGAAGGTCATGTTTCCAATTCCAAAACGCATATGGTGTTAGATTTTGTTAAGTTTTCCAATGTTCAATCAATTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATCCAATGAATGTCGGGGGTTCATCTTCTAGGACAAATCACAATCAAGGAAGAGATGAGAACAACAAAGAAGAGAAATCATCAGAGGCTAAGACTTTTTCTTGCAATTTTTGTCACAAAGAGTTTTCTTCTTCACAAGCACTGGGAGGACACCAAAATGCCCATAAACAAGAAAGAGCTCTTGCAAAACGTCATCAAGGAATTGATGGTGGTGGTTTTGGAAACCCTCATATTCTCTATTATCCTTATCCCACACACTCCTTATATGGATCTTATAATAGGACACTTGGGGTTCGAATGGACTCCATGATTCACAAGCCTCTATATCCTTCATCCTCATTAGGTTTAAGGTTTGGTCAAGCATTTTCAAGGCAAGAGATGATAAACTCTTCTTCTCTTGGTTTACAGAAAAATACTGGAATTAGGATTATGGAAAGTGATACAACTCTGAGGACACAAAATGATCATGATTATCCCTCTGAAGCCTCTAGCACCTCACAAAATATTTGCCATAAAGAAGAAGGGAAGAAGGACGAGGTGACAACAACGACGGAGAAGGGTATCAAATTTGAAGAAGGTCAGGTTTCTAATTCCAAACCTCAAATGGTGTTAGATTTTGCTAAGTTTTCCAATGATCAATCAATTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATCCAATGAATGTCACGGGTTCATCTTCTAGGGCTAATCACACTCAAGGGAGAGATGAGAACAACAAAGAAGATAAATCATCAGAGGCTAAGACTTTTTCTTGCAATTTTTGTCAGAAAGAGTTTTCTTCTTCACAGGCACTGGGAGGACACCAAAATGCCCATAAACAAGAAAGAGCTCTTGCAAAGCGTCGTCAAGGAATTGATGGTGGTACTTTTGGGAACCCTCATATTCTCTATTATCCTTACCCCACACACTCTTTGTATGGATCTTATAATAGGGCACTTGGTGTTCGAATGGACTCCATGATTCACAAGCCTCTGTATCCTTCATCCTCACTAGGTTTGAGGTTTGGTCAAGCATTGTCAAGGCAAGAGATGATAAACTCTTCTTCTCTTGGTTTACAGAAAAATACTGGAATTAGGATTATGGGAAATGACACAATTTTGAGGACGCAAAATGATCATGGTACTACTAGAAACAATATTCCCTTTCTCGGAGAATCTTCTACAAATATTACTATCAGATCAAATTTGACTCCATTGAATATAGAGGATAATGGTGATCACTCCAAGAAAGAAGAAATCTCATATTCCACTTCTTCTGATGAGATTGATTTATCACTTAAACTTTAG 1542 0.3761 MASSHNLKDYSSEVSSTSQDICHKEEGKKVEVTTMKDKSIKFEEGHVSNSKTHMVLDFVKFSNVQSICGSKVELDFFNPMNVGGSSSRTNHNQGRDENNKEEKSSEAKTFSCNFCHKEFSSSQALGGHQNAHKQERALAKRHQGIDGGGFGNPHILYYPYPTHSLYGSYNRTLGVRMDSMIHKPLYPSSSLGLRFGQAFSRQEMINSSSLGLQKNTGIRIMESDTTLRTQNDHDYPSEASSTSQNICHKEEGKKDEVTTTTEKGIKFEEGQVSNSKPQMVLDFAKFSNDQSICGSKVELDFFNPMNVTGSSSRANHTQGRDENNKEDKSSEAKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGTFGNPHILYYPYPTHSLYGSYNRALGVRMDSMIHKPLYPSSSLGLRFGQALSRQEMINSSSLGLQKNTGIRIMGNDTILRTQNDHGTTRNNIPFLGESSTNITIRSNLTPLNIEDNGDHSKKEEISYSTSSDEIDLSLKL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00212 513 MobiDBLite consensus disorder prediction 1 22 - -
Phac5g00212 513 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Phac5g00212 513 MobiDBLite consensus disorder prediction 307 330 - -
Phac5g00212 513 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 231 513 IPR044246 GO:0009788
Phac5g00212 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 335 362 IPR013087 -
Phac5g00212 513 ProSitePatterns Zinc finger C2H2 type domain signature. 337 357 IPR013087 -
Phac5g00212 513 MobiDBLite consensus disorder prediction 82 105 - -
Phac5g00212 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Phac5g00212 513 MobiDBLite consensus disorder prediction 232 246 - -
Phac5g00212 513 Gene3D Classic Zinc Finger 313 371 - -
Phac5g00212 513 Gene3D Classic Zinc Finger 87 146 - -
Phac5g00212 513 Pfam C2H2-type zinc finger 335 359 - -
Phac5g00212 513 Pfam C2H2-type zinc finger 110 134 - -
Phac5g00212 513 SUPERFAMILY beta-beta-alpha zinc fingers 108 357 IPR036236 -
Phac5g00212 513 MobiDBLite consensus disorder prediction 1 18 - -
Phac5g00212 513 MobiDBLite consensus disorder prediction 229 259 - -
Phac5g00212 513 SMART c2h2final6 110 132 IPR013087 -
Phac5g00212 513 SMART c2h2final6 335 357 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00212 Phac-Chr5 1666966 1671163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00212 329 409 C2H2 Transcription Factor Family AT5G10970 56.098 2.22e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac5g00212 zf-C2H2_6 0.00012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00212 - - gmx:102661483 364.385