Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00188 ATGAGTCAAATGACACATGACATTGATGACAATGTGCATGGTGAGGATCAGACTGGGTCACAGTTGAACGATGAGGGTAATGGAGGAGGTGTTGTTCTGAAGAAAGGACCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATAAGCATGGAGAGGGGAATTGGAATGCAGTTCAGAAGTATTCAGGCCTTTCTCGTTGTGGAAAAAGTTGCCGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCTGAAATAGTTATGCAAGCATTTCAAGATAGTAAGCATGGCCAAGGTACTGGTGAAATCAATGATGGAGATGGATGCCACCATGATTTCATGGAGAAAAACAATTATGAGATGCATGATGCAATATTTGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTGAGCTTTCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCTCCATACTGTAATTTCCTGCCATCGACATTACCTAATCATGATCATCTTCAAGAGACATCAGTGTCTTTTATTGGTTCCAGTGAATTGAACACTAATGGGTTTTATCCATTCAACCACTTTAAGGATAATACTTCTGATAAGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCCATTTGTTACAGCCATTCATTATCGAATGACAATTACTCTACTTCTAAGCCGACTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGTTAGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGAATCTATTGATGTTTTAATTCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCGCCACTCAGTTGTTGCTTCCTTAATGAATTTCTTTATCAGCAGGCGAAGGCTTTTAGTTATTCAAAGAATAATTGGTCTGACAAGAGCTCAAGTTCATCCATTGCAACTCCCGTTGACAGAGCTGAGAGCTCGGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATCCTTAATGAGCATCCTGTTGTTGGCACCAATGGAAAGTCGTGGGATGGATGGGAACCTTTTCAGAACTTTAGTGAAAAATCTGCAGGCAACAATGAGAAATTGCAATCAGTTGATCAGGTTTTGGCCCCTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATCTCACTTGGCCAGATGTCTTACTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCATGACGGCATGAACCCCGCTGGTATGATTGATGCTAGTGATGATGTCAAGAGACCGTAA 1548 0.4309 MSQMTHDIDDNVHGEDQTGSQLNDEGNGGGVVLKKGPWTAAEDVILVDYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEIVMQAFQDSKHGQGTGEINDGDGCHHDFMEKNNYEMHDAIFDSLKENQGILPFVPELSDISANSILPNVLGSPPYCNFLPSTLPNHDHLQETSVSFIGSSELNTNGFYPFNHFKDNTSDKIAESFGLHSPLDHGASSYGSICYSHSLSNDNYSTSKPTSEAVKSELPSLQYPETEFVSWGTSPPPPLNESIDVLIHSPQPPYALDSGSSPLSCCFLNEFLYQQAKAFSYSKNNWSDKSSSSSIATPVDRAESSALNMYETEWEDYADPVSPFGATSILNEHPVVGTNGKSWDGWEPFQNFSEKSAGNNEKLQSVDQVLAPKSENQSMSLLNLTWPDVLLASDWHELYSEHDGMNPAGMIDASDDVKRP* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00188 515 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 7 497 - -
Phac5g00188 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Phac5g00188 515 FunFam Transcription factor GAMYB 90 136 - -
Phac5g00188 515 ProSiteProfiles Myb-like domain profile. 33 82 IPR001005 -
Phac5g00188 515 Gene3D - 34 87 - -
Phac5g00188 515 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Phac5g00188 515 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Phac5g00188 515 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Phac5g00188 515 Gene3D - 90 136 - -
Phac5g00188 515 MobiDBLite consensus disorder prediction 1 33 - -
Phac5g00188 515 FunFam MYB-related transcription factor 34 87 - -
Phac5g00188 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Phac5g00188 515 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Phac5g00188 515 CDD SANT 37 82 IPR001005 -
Phac5g00188 515 SMART sant 87 135 IPR001005 -
Phac5g00188 515 SMART sant 34 84 IPR001005 -
Phac5g00188 515 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00188 Phac-Chr5 1520628 1525278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00188 5 512 MYB Transcription Factor Family AT3G11440 39.741 6.93e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac5g00188 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00188 K09422 - gmx:100792349 856.67