Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00172 ATGGCCTCCGAAAAGAAACTGTCGAATCCTATGCGCGAAATCAAAGTGCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGCGGTGATCGTCTCACTCGCGCTGCCAAGGTGCTCGAGCAACTCAGTGGCCAAACCCCTGTTTTCTCGAAAGCGAGGTACACTGTGCGTTCCTTTGGGATTAGAAGAAACGAGAAGATTGCGTGCTATGTGACTGTGAGAGGTGACAAGGCGATGCAGCTTTTGGAAAGTGGCTTGAAGGTGAAGGAGTACGAGCTGCTAAGGAGAAACTTCAGCGACACTGGCTGCTTCGGCTTCGGCATTCAGGAGCACATTGATTTGGGAATCAAGTATGATCCTTCTACTGGTATTTATGGAATGGATTTCTTTGTTGTTCTGGAGCGCCCTGGCTATCGTGTGGGAAGACGTCGTCGTTGCAAGTCTCGTGTTGGAATCCAGCATCGTGTGACAAAGGAGGATTCCATGAAGTGGTTCCAAGTTAAATACGAAGGTGTCATCCTAAACAAGTCCCAGGCAATTGTTTAG 546 0.4927 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSQAIV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00172 181 SUPERFAMILY RL5-like 8 173 IPR022803 -
Phac5g00172 181 Pfam Ribosomal protein L5 9 62 IPR031310 -
Phac5g00172 181 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Phac5g00172 181 FunFam 60S ribosomal protein L11 2 174 - -
Phac5g00172 181 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Phac5g00172 181 Gene3D - 2 177 IPR022803 -
Phac5g00172 181 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Phac5g00172 181 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00172 Phac-Chr5 1338693 1340740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00172 1 181 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.475 1.11e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00172 K02868 - gmx:100818410 341.273