Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00149 ATGGCTTTGAGGGTTATAGCAGTTTCGGCGGTTTCTACATTTTTAAGCTTTGTGGGTCTTCAGTTTTGCACCGACTTGTCTTTGGACAAACTTAGATCAGATGGACTAATAGGCTGGAATTTAATTCACTTGGATGATGCCAGCCAAGACATTGAGTTGCCTTCGGGTTTGTACACCACCATAGGGCTACTGCTGAATTGCATGATCAATTTATTTGTCCTTCTCAATCTTTGTATCAAGGCTGTGTTTTTCTCAGAGTTATATGCTTCTGAGACTCGTAAACTGATTGAGCGTCTTGTTAATTATGTCATTTACAAGGGGACATTTCTTCCACTGATTGTGCCACCAACAATTTATCAAGCTGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGCTCTCTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCTACACCCTGGACGTATCTTCGTGTATATTCAGCATTATTATTTGTTTTCATGGCTGATGTTTTCTGGATAAGGCTTTGTCTGACAATATATAGAACACACGGGTCCTCCATGTATCTGCTATTGTTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGCTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGCAGTGATTTCCGAACACCTAAACTGCTTAACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGGAACTTGGGGTTTTTCCTAGACATGGCTACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGAATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCAATAGTAAATCGCATAAAAGGCTTTATCAAGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACGGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGATATATATACTTGTCCAACTTGTCGAAAGCCACTTTTTGAGGGTGTGCCTCAAAATGAAGCAAGCTCTGACACGGGAACTATATCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTGGATCGGCCAAACCCTTCTAGACATACCATGCCTACCGGATTATATCCAAATCAGACACTAAACACTCCTGAAGGTGTTACTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGACGGGGCCGGTCCTTCTACTGCTATCAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCCGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCAAGTGCTTCAACCATCCCTCCCCCCAGTGGAAGATCACCGGGACGAACTGGTAGTTTACATTTAAGGACTGCCTCACAGTCTTCAAATGATAATGTCGCTAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAAAGAACAAATTCAGTTATGGTTACTGTGAATAATCTTCTCCAAATGTGA 1761 0.4259 MALRVIAVSAVSTFLSFVGLQFCTDLSLDKLRSDGLIGWNLIHLDDASQDIELPSGLYTTIGLLLNCMINLFVLLNLCIKAVFFSELYASETRKLIERLVNYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVFWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNSSDFRTPKLLNTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTDIYTCPTCRKPLFEGVPQNEASSDTGTISSDEQLARQISAGLDRPNPSRHTMPTGLYPNQTLNTPEGVTWRGAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINPSQASASASTIPPPSGRSPGRTGSLHLRTASQSSNDNVANILAMAETVREVLPHIPDDMIFQDLQRTNSVMVTVNNLLQM* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00149 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Phac5g00149 586 SUPERFAMILY RING/U-box 325 387 - -
Phac5g00149 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Phac5g00149 586 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 4 586 - -
Phac5g00149 586 MobiDBLite consensus disorder prediction 411 434 - -
Phac5g00149 586 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Phac5g00149 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
Phac5g00149 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Phac5g00149 586 SMART ring_2 338 379 IPR001841 -
Phac5g00149 586 MobiDBLite consensus disorder prediction 509 537 - -
Phac5g00149 586 Pfam Ring finger domain 336 380 IPR001841 -
Phac5g00149 586 FunFam E3 ubiquitin protein ligase RIN2 545 585 - -
Phac5g00149 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Phac5g00149 586 Gene3D - 545 585 - -
Phac5g00149 586 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00149 Phac-Chr5 1258693 1265511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00149 69 421 C3H Transcription Factor Family AT3G16090 26.702 5.71e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00149 K10636 - gmx:100820578 1084.32