Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00124 ATGAATAATTTTTCTCATGTTCCCCCCGGTTTTAGGTTCCACCCCACTGATGAGGAACTTGTTGACTACTATCTGAGGAAGAAAATTACCTCAAGAAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACAGGAACTCGCACAAATAGAGCAACAGCAGCTGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCAAAGCATGAGTTGATAGGGATGAGGAAAACCCTAGTCTTTTACAAAGGTCGAGCCCCCAATGGACAAAAATCAGATTGGATCATGCACGAATATCGACTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTACCAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGAGCAAGTCTCTTTCATGCAAGACATGGATTCACCAAAGCAAACCTCTCAACCTAATTTGCCCTACCACTTCCCATATCCATGCAAGAAAGAGCTAGATTTGCCATACCATTTGCCTCTCCACCTTCCATTGGAGAACCAAAAATTGCTTCAAACTGTCTCCAACTCAATCACACCATATCCTGAAGAAAACCATGTGATGCAGCAGCCAGTGTCATCAATCATGCAGCAGCAACAAGTTCAACACTCTTCTCAACAAAATTTTCATGCAGTGTTTGGAAACAATGTCAATGAACAAGTTGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAGCTTAGCCAGGAAGATGCACCCAAAGAGAACAGTTACTCAAACACAGACAACAACAACATCTTTCATGTGAAGAACAATGACAATGTTGAACATTTGGGAGACTTGGACAAGGAGGAGATGATGCCTGAAAATGCCTCAACTTCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1038 0.4133 MNNFSHVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLPTMRKLSEHDSPCWYDEQVSFMQDMDSPKQTSQPNLPYHFPYPCKKELDLPYHLPLHLPLENQKLLQTVSNSITPYPEENHVMQQPVSSIMQQQQVQHSSQQNFHAVFGNNVNEQVADWRALDKYVASQLSQEDAPKENSYSNTDNNNIFHVKNNDNVEHLGDLDKEEMMPENASTSNSSCPIDMWK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00124 345 Gene3D NAC domain 16 158 IPR036093 GO:0003677|GO:0006355
Phac5g00124 345 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Phac5g00124 345 MobiDBLite consensus disorder prediction 329 345 - -
Phac5g00124 345 MobiDBLite consensus disorder prediction 288 312 - -
Phac5g00124 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 290 - -
Phac5g00124 345 MobiDBLite consensus disorder prediction 326 345 - -
Phac5g00124 345 FunFam NAC domain-containing protein 16 160 - -
Phac5g00124 345 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Phac5g00124 345 MobiDBLite consensus disorder prediction 290 312 - -
Phac5g00124 345 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00124 Phac-Chr5 1036243 1042719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00124 1 345 NAC Transcription Factor Family AT1G12260 57.542 3.45e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac5g00124 NAM 3.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00124 - - gmx:100775867 568.155