Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00100 ATGGCTTCGTCTTCGAGTAGCGGATTGACGTTCAAGCTGCATCCTCTCGTAATCGTCAACATCTCCGACCATTACACGAGGGTCAAGTCTCAGATGAACCCAACACTCGCACCACCGCACGCCAACAACGCCGCCGCACCCAACGGCGGCGACGGCGTCGTTTCGTCACTCCCTCCCCGGGTCTATGGATGCGTCATAGGAGTGCAGAAGGGCCGCACCGTCGAGATCTTCAACAGCTTCGAACTCCTCTACGATCCTTCCACTCATTCCCTCGATCGCCCCTTCCTTGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCACACTTCTACATACTAGGATGGTATTCGACTGGGAGTGATGCGGAGGAGTCAGACATGCATATTCACAAAGCTCTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCACTCTCAGAAGGATCTCCCAGTCAGTATTTATGAAAGTGAACTGCATGTCATAGATGGGATTCCACAGCTTATCTTTGTTCTCTCAAGCTATACTATCGAGACCGTTGAAGCAGAACGGATATCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCGGCTACACAACTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCAATATCTTGTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCCGGGAAATTTCAAGATGATTTCTTAATGGAGTACAATGATACCTTATTGATTAGTTACCTGGCAATGCTTACCAACTGCTCAAGTGGAATGAATGAGCTGGTGGACAAATTTAATACCGCGTATGATAGGCATACCAGAAGGGGTGGACGAACTGCTTTTATGTGA 963 0.4621 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPPHANNAAAPNGGDGVVSSLPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIYESELHVIDGIPQLIFVLSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHQYLVAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSGMNELVDKFNTAYDRHTRRGGRTAFM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00100 320 CDD MPN_CSN6 9 316 IPR033859 GO:0000338|GO:0008180
Phac5g00100 320 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 311 - -
Phac5g00100 320 Pfam Maintenance of mitochondrial structure and function 187 301 IPR024969 -
Phac5g00100 320 FunFam COP9 signalosome subunit 6 1 201 - -
Phac5g00100 320 Gene3D Cytidine Deaminase, domain 2 1 201 - -
Phac5g00100 320 ProSiteProfiles MPN domain profile. 11 167 IPR037518 -
Phac5g00100 320 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 139 IPR000555 GO:0005515|GO:0008233|GO:0008237
Phac5g00100 320 SMART pad1_6 10 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00100 Phac-Chr5 844879 852342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00100 2 271 Eukaryotic Initiation Factors Gene Family AT2G39990 21.818 8.22e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00100 K12179 - gmx:100797079 574.704