Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00015 ATGGGGAGAGGAAAGATTGAAATCAAAAGGATTGAGAACACCACAAATCGGCAGGTAACCTTCTGCAAGAGAAGAAACGGGCTTCTGAAGAAAGCTTATGAGTTATCAGTGCTGTGTGATGCAGAAGTGGCTCTCATTGTCTTCTCCAGCCGTGGCAGACTCTATGAGTATTCAAACAACAAGTCAGTGTTGAACCTTCTTCTTCCCTCCATTTTCTCTTCCTTTATACATGTCTACACTTTGCATGACTTTGCAGATTCTTCTTTTTCTCTGTGA 276 0.4203 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNKSVLNLLLPSIFSSFIHVYTLHDFADSSFSL* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00015 91 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Phac5g00015 91 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac5g00015 91 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac5g00015 91 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac5g00015 91 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 63 - -
Phac5g00015 91 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac5g00015 91 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac5g00015 91 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac5g00015 91 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac5g00015 91 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Phac5g00015 91 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Phac5g00015 91 FunFam MADS-box transcription factor 21 13 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00015 Phac-Chr5 297169 298309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00015 1 60 MADS-box Gene Family AT4G09960 95.000 7.08e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac5g00015 SRF-TF 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00015 K09264 - fve:101302731 124.79