Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00010 ATGATGGAAGAAAGGAAGATGAAGGTTCGTTCGGAAAGGGAGAAGACGAAAGTGGTGATTAGGCATTTGCCTCCTTCTCTCACTCAATCCGATCTCTTCCAACACATCGATTCACACTTCGATTCACGCTACAATTGGTTCTCTTTCAGACCCGGCAACACCAGTCTCAAGCGTCAGAGGCATTCCCGAGCCTATATAGACTTCAATTCTCCTCATGATGTCTTCGAGTTTGCTCACTTCTTCCATGGACATGTTTTTGTTAACGAGAGAGGTGCTCAACATAAAGCGATTGTTGAGTACGCCCCTTCCCAGCGTGTTCCGAAGCCAACTACCAAGAAGGATGGACGTGAAGGAACCATATACAAAGATCCTGACTATCTGGAGTTCCTCAAACTCATTGCAAAGCCACATGAACATCTTCCCAGTGCAGAGATACAATTGGAAAGAAAAGAAGCTGAACAAGCTGGGGCTAACAAAGAAACACCTATTGTCACACCCTTGATGGAATATGTTCGACAGAAACGAGCTGTTGACACTGGTATGCAGGCTTCCTCAGCAGTGGCAAAAGTTAGCAGAAGATCCAGAGCGGCTTTGCCTGGCAAGCCTGGCTCAGGAAATACTAAACGAGGATCTGAAAAGAAAAAGTATGTTCAGAAGGACAATGCCAAGAGTGCTGCTCGCAAAGAGTCAAAAGACAAGTCAGCCTTTATTGTGGTTCCCCGGAGAGAGGATCTATCAGCTGAATCAATGCATGGCATTGAAGGTCCCATTTCTGGAATTCCATTGTCTTCTGACTCAGGAAAGAAAAAAATCCTTCTTCTGAAAGGGAAACAGCGGGAAATTCCCAGTGCCACTGAGGGTACAGTAAAACAGCAAATCGTACAATCTGGAAATTCTCCCATTTCAACTCCTGCGAAACAGAACCAGAGACGTGAAAATAGTGGAAGATTGATCAGGAGCATACTTCTAAATAATGAAGCTCGTCAAAGTCAGTCTATTACTGGGACACAACATAAGATTCAAATTTTAAGCTCAGAGAATGGGAAGCGACCACCTCGTTCTTTTGGCTCAAGGTCTGGGTTAAATGATCAACATCCAAATCATGATATTGCACAAGTTAATTCTGAAGGGGATTCTAAAAGGGCTTTGGATGAAAAATTCGTAAAAAGGGATCCACATGGTTTAGGTAGCAGTGAGAAAACAGAAAAGCGTACTAGAAACAAGGATAGACCTGATCGTGGTGTTTGGACACCCCTTCGTCGTTCTGATGTTTCACATGCTGGTAGTGACTACTCGTCATCCTCAATGGCACAACCTACTCTGTCAAATCCTGAATCTGCTGAAGGAGAACTAAAAGAAAATGTTACTTCTGGGAACAGGGGCAGTGAATTCTCTTCTGCAGGTGGAAGAGGCAATCCTTCTATTGAGAATGGTTCCCAAAGAAATTTTGCACGCCGTGGAGCTTCCTATGTAGTGAAGGATGATGGTGCAGTCAGTATAAGTGAAGGGAAACCTTCCAAGAAAAGTGTTGGGCACAGTGCTCATGAGAGAATTCCCGAGGAATTTATAAAGAGATTTGGAGATGAACTATCAGCTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGCTGAAGAAATGTGGAAAAGATGTTTTCTTCAGCAGCAAATGGCGAGAGTTTGTAAACTACTATTCTCTGGGGTATGGTTCCCATCTAATTTTCAGATATGTTGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCCCCAAACTCGGGGCATTAATGAACCAAACTCGGAGAATTGGAAGAGATCCAAGTTTGAGGATCAGCAGCAGCACCAAGAGCTTGTGGTGGGGAATGGGGTAGAAACTACTGATGAAGATTATGTGAATTTAATACGTCCGAGTCAGACTAAAGGAAGGAAGAAAAAATGTTATTATTCTCAAGGGAAACAACTCAAAAGTGGATGCAGTGAAAACCACTCTTCTTGGGAGATAACAAAGGATGTTGCTACTGCTAGTGATAGATTAATTGCAAAAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAAGTGAATTTGCTGGCAAGTATCTGAAGCCGGGTGTTGGTACGATGCTTCAAAATAGTAATGGAGAGCAGTGGGAAGTTTCTTGCTCATGTCATAGCCGTAGCAGAGCAATGATAATATCTAGGGGATGGGCTAAATTTGTGAGGGACAACGATCTATCAGAAGGAGATTTATGTGTGTTGGAGTTGATAAAGAGGGACCCCATTGTGCTAAAATTTACTGTGCGTGGCGATGCTCAATATTATGACGTTGACGTTTGA 2385 0.4277 MMEERKMKVRSEREKTKVVIRHLPPSLTQSDLFQHIDSHFDSRYNWFSFRPGNTSLKRQRHSRAYIDFNSPHDVFEFAHFFHGHVFVNERGAQHKAIVEYAPSQRVPKPTTKKDGREGTIYKDPDYLEFLKLIAKPHEHLPSAEIQLERKEAEQAGANKETPIVTPLMEYVRQKRAVDTGMQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKSAARKESKDKSAFIVVPRREDLSAESMHGIEGPISGIPLSSDSGKKKILLLKGKQREIPSATEGTVKQQIVQSGNSPISTPAKQNQRRENSGRLIRSILLNNEARQSQSITGTQHKIQILSSENGKRPPRSFGSRSGLNDQHPNHDIAQVNSEGDSKRALDEKFVKRDPHGLGSSEKTEKRTRNKDRPDRGVWTPLRRSDVSHAGSDYSSSSMAQPTLSNPESAEGELKENVTSGNRGSEFSSAGGRGNPSIENGSQRNFARRGASYVVKDDGAVSISEGKPSKKSVGHSAHERIPEEFIKRFGDELSAVATITVPDGRVWKMRLKKCGKDVFFSSKWREFVNYYSLGYGSHLIFRYVGNSKFRVLIFDITAAEICYPPQTRGINEPNSENWKRSKFEDQQQHQELVVGNGVETTDEDYVNLIRPSQTKGRKKKCYYSQGKQLKSGCSENHSSWEITKDVATASDRLIAKNPFVTCTIKSSRLYVSSEFAGKYLKPGVGTMLQNSNGEQWEVSCSCHSRSRAMIISRGWAKFVRDNDLSEGDLCVLELIKRDPIVLKFTVRGDAQYYDVDV* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00010 794 MobiDBLite consensus disorder prediction 328 483 - -
Phac5g00010 794 MobiDBLite consensus disorder prediction 374 419 - -
Phac5g00010 794 MobiDBLite consensus disorder prediction 182 235 - -
Phac5g00010 794 SUPERFAMILY DNA-binding pseudobarrel domain 514 593 IPR015300 -
Phac5g00010 794 ProSiteProfiles B3 DNA-binding domain profile. 518 594 IPR003340 GO:0003677
Phac5g00010 794 Coils Coil 140 160 - -
Phac5g00010 794 Gene3D - 504 595 IPR015300 -
Phac5g00010 794 Gene3D - 678 786 IPR015300 -
Phac5g00010 794 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 7 516 IPR039722 GO:0000184
Phac5g00010 794 MobiDBLite consensus disorder prediction 283 313 - -
Phac5g00010 794 CDD B3_DNA 509 592 IPR003340 GO:0003677
Phac5g00010 794 MobiDBLite consensus disorder prediction 426 483 - -
Phac5g00010 794 Pfam B3 DNA binding domain 701 781 IPR003340 GO:0003677
Phac5g00010 794 Pfam B3 DNA binding domain 508 592 IPR003340 GO:0003677
Phac5g00010 794 CDD RRM_like_Smg4_UPF3 17 102 - -
Phac5g00010 794 SMART B3_2 504 594 IPR003340 GO:0003677
Phac5g00010 794 SMART B3_2 696 787 IPR003340 GO:0003677
Phac5g00010 794 SUPERFAMILY RNA-binding domain, RBD 16 105 IPR035979 GO:0003676
Phac5g00010 794 MobiDBLite consensus disorder prediction 207 235 - -
Phac5g00010 794 MobiDBLite consensus disorder prediction 328 373 - -
Phac5g00010 794 MobiDBLite consensus disorder prediction 284 313 - -
Phac5g00010 794 SUPERFAMILY DNA-binding pseudobarrel domain 696 775 IPR015300 -
Phac5g00010 794 CDD B3_DNA 700 784 IPR003340 GO:0003677
Phac5g00010 794 Gene3D - 7 105 IPR012677 -
Phac5g00010 794 ProSiteProfiles B3 DNA-binding domain profile. 691 787 IPR003340 GO:0003677
Phac5g00010 794 Pfam Smg-4/UPF3 family 14 176 IPR005120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00010 Phac-Chr5 277256 289626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00010 517 782 B3 DNA Binding Superfamily AT3G18990 31.348 9.76e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac5g00010 Smg4_UPF3 6.3e-50 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00010 K14328 - gmx:100795376 881.322