Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02364 ATGAAGACGCATCCGCCGCAGCCAGAGGGTGGCTCCGCCGCGCCCAATCCCAATCCCACCCAAGAGAAGAGGAGCATAAACCCGGAGCTGTGGCAAGCTTGCGCAGGGCCTTTGGTGAATCTTCCTCCCTCCGCCACACACGTCATATACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCGCTCAAGAAAGATGTCGACTCGCAAATTCCCAACTATCCCAATCTCCCCTCCAAGTTGCTCTGTCTCCTTCACAATCTCACTTTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACTCTTCAACCAGTTCCTTCTTTCGACAAGGATGCTCTGCTGAGGTCAGATCTTGCTCTCAAGTCCACCAAGCCGCAACCCGACTTCTTCTGTAAACAGCTCACCGCAAGTGATACCAGCACTCACGGAGGTTTCTCTGTGCCCCGTCGTGCCGCCGAGAAGATTTTCCCTCATCTTGATTACTCTATGCAACCTCCTGCGCAAGAACTCGTCGCCAGGGATTTGCACGACAATGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAACGTCACTTGCTTACCACTGGGTGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTTGCCGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCTTCGTCAGTACTATCGAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCGGCTCATGCAGCCGCAAACAATAGCCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCGGTGTACAGCCACCAACCATCACTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCGGGAACTAGGAGATATATGGGTACAATTACAGGTATCAGTGATCTGGACCCTGTGCGATGGAAAAATTCTCAATGGAGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATTGAACCAGTAACTGCTCCATTTTTCCTCTGCCCACCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCGGATGATGAATTATCTGATTTTGATAACATTTTCAAACGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGTCTGAGCTTAGCTCAATGGATGAACGTGCAGCAAAATCCGGCACTGGCTAGCTCGTTGCAGCCAAATTTTGCACCTTCTTTATCCGGATCTATTTTGCAAAATATTCCTGGGGCTGATATATCTCGGCAGCTGGGATTTTCTGCTCCACAAATTTCTCAGTCAAACAGTGTAGCCTTCAATACTCAGAGACTACTTCAGACTGCTCAACAGCTGGATCACCTTCAGAAGCTACCATCTACATCTAGCACATTGGGAACAGTCCTGCCACCACAGCAACAGTTGGGTGATATCACTCAACAATCAAGGCAAAACTTGGCAAATCAAACTATACCACAGAGTCAAGTTCAGGCCCAACTCTTGCATCCCCAAAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAAATGCATAGAAGCCTCTCTCAGAATCCATCACAGCAGCAGACAATTATAGGTCAGAGTCAACAACAAAATTTGATCCAGTCTCCTATCCCTGATCATCTTCAACAATTACAGATGTCCGACAATCAGATTCAGTTGCACTTGTTACAGAAGCTTCAACAACAAAAACAAACGCATTTGGCACAGCAAACAGTGCTGCAGCAGCCTACTCAACTTACTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACACATAACTTGTCTAGAGCAGTAACATCTGGTCAAGTTCTGGAAATTCCTTCTATGCTTCAAAACTCACTGCCTGAGGCTAATTCTATCTCTAATCATATCACAAAGGCTAATTTTCAGAACAATATTCAATTCCCTCAGCAGCCCAAGCTTCAACAGCAGCAACCCGGCTTGCTGTCTGAAATGTCTGGCCACATGGCACTTCTCCCTACCCATACAACTAACCAACTATCTGCTGCCGGCAGTAGTATACTGAATGGAGCAGCTGGGGCAGGGCAATCTGTAATTACTGATGATATTCCATCTTGCTCCACCTCACCTTCTACAAATAACTGTGCCAGTGCACTTGCACCGTTGATAAATTCTCGATTGCAGAGAAACACAGTAGTAGGGGATGACATGTCTCAGTCTGCTTCAACAATCTTGAGTTCAAGTGCGTTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATTTACAGCCAAAGTGTGAAGTTAAACCTTCTCTGAATATTTCTAAAAATCAGAATCAAGGGCATTTCGGCCTTCAGTCATACTTGAATGGTAGTGCTGCCCATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGCCTTTCTCAGAGTGACGCTCATATGCATCAGAATAACAATCCATTAGCTTATAATCCACATTCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGGGCAATATTCCATATGCCAACAACATGGATAGCCAAATGGGTATGCAACTGAATCCAGATTCCCTTTTAACCAAGGGCACATTGGGGTTGGGGAAGGATTTGTCTAATAATTTCTCTTCAGAAGGTCTGCTTGGTAATTATGAAAATAACAGAGATGCTCAGCAGGAGCTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAGCTTCTTGAATAGGAGTACATGGGCTCCACCACCAGCACCGCCTCCGCCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGAACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACAAGGTATTCAGGTTATGAGGAGCTGAAACAGGATCTAGCTCGTAGATTTGGAATAGAGGGTCAGCTGGAGGATCGGCAGAGGATAGGTTGGAAACTTGTCTATGTAGATCACGAGAGTGATGTTCTACTGGTGGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGTATTAAGATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGAGGCCTTCCAAATCAAGCGTGTAGCAGCTCTGACGGTGGGAATACTTAG 3348 0.454 MKTHPPQPEGGSAAPNPNPTQEKRSINPELWQACAGPLVNLPPSATHVIYFPQGHSEQVAASLKKDVDSQIPNYPNLPSKLLCLLHNLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPHLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDELSDFDNIFKRTMPWLGDDMCMKDPQGLPGLSLAQWMNVQQNPALASSLQPNFAPSLSGSILQNIPGADISRQLGFSAPQISQSNSVAFNTQRLLQTAQQLDHLQKLPSTSSTLGTVLPPQQQLGDITQQSRQNLANQTIPQSQVQAQLLHPQNIVQTNNILQQQQPSIQNHQMHRSLSQNPSQQQTIIGQSQQQNLIQSPIPDHLQQLQMSDNQIQLHLLQKLQQQKQTHLAQQTVLQQPTQLTQIQDQQRQILDKTHNLSRAVTSGQVLEIPSMLQNSLPEANSISNHITKANFQNNIQFPQQPKLQQQQPGLLSEMSGHMALLPTHTTNQLSAAGSSILNGAAGAGQSVITDDIPSCSTSPSTNNCASALAPLINSRLQRNTVVGDDMSQSASTILSSSALETMSSNANLLKDLQPKCEVKPSLNISKNQNQGHFGLQSYLNGSAAHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLAYNPHSMLFRDNSQDGEVQADARGNIPYANNMDSQMGMQLNPDSLLTKGTLGLGKDLSNNFSSEGLLGNYENNRDAQQELSSSMVSQTFGVPDMAFNSIDSTIDDSSFLNRSTWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02364 1115 Gene3D - 297 368 - -
Phac4g02364 1115 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Phac4g02364 1115 ProSiteProfiles PB1 domain profile. 1003 1087 IPR000270 GO:0005515
Phac4g02364 1115 SUPERFAMILY CAD & PB1 domains 1016 1081 - -
Phac4g02364 1115 Gene3D - 998 1092 - -
Phac4g02364 1115 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
Phac4g02364 1115 FunFam Auxin response factor 297 368 - -
Phac4g02364 1115 FunFam Auxin response factor 131 235 - -
Phac4g02364 1115 MobiDBLite consensus disorder prediction 1 24 - -
Phac4g02364 1115 Gene3D - 131 234 IPR015300 -
Phac4g02364 1115 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 627 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac4g02364 1115 SMART B3_2 133 235 IPR003340 GO:0003677
Phac4g02364 1115 MobiDBLite consensus disorder prediction 976 997 - -
Phac4g02364 1115 FunFam Auxin response factor 998 1092 - -
Phac4g02364 1115 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Phac4g02364 1115 CDD B3_DNA 132 224 IPR003340 GO:0003677
Phac4g02364 1115 MobiDBLite consensus disorder prediction 983 997 - -
Phac4g02364 1115 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac4g02364 1115 Pfam AUX/IAA family 1003 1088 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02364 Phac-Chr4 49734165 49740201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02364 22 476 B3 DNA Binding Superfamily AT1G19220 72.926 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac4g02364 B3 1.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02364 - - ccaj:109803454 1915.97