Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02302 ATGGAGAATAGCTGCTTTCTAGCTTTTCTCATCCTCATTCTACATTCAATTACAACAAAAGCTGTCTTCGGTGTTGGTGGTGGTGTTGGTGTTGGTGTAGGTGTAGGTGTAGGCGTAGGTGTTGGTGTTGGCAACGGAAATGGCGGTGGCAATGGTGGAACGGTTTGGGTTGGAGGAGGGATTAACAGCCCAGAGCCCCCTGGATCTTCAGTGCCAAAGCCTGAAGGAGCTTACACAGCTCTGCAAGCTTGGAAATCTGCAATCACTGAGGACCCTCTGAACATTTTAGAAAGCTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAGCATTCTCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGCAAGGAACTCTTGTCAAAGAGCTCTCTCTTCTCAGTGATTTGTCTCTTCTCCACCTCAACACTAACAGGTTCACGGGCACTGTTCCTGATACATTCAGAGACCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGCTGCTACGCTGTACATGCCAGGCCTCATCTACTTAGACCTCAGATTCAACTACTTCTCTGGGGCCCTCCCCGAGGAACTTTTCAGCAAGAATCTGGATGCAATATTTCTCAATAACAACCAATTTGAAGGTGAAATCCCCCAAAACTTGGGTAGTTCCCCAGCCTCGGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTATTCCTCAATAACCAGTTAACTGGTTGCATCCCTGAGGGAGTGGGGCTATTCACAGAGATGCAAGTTCTGGATGTGAGCTTCAACTCACTTATGGGTCATTTGCCAGACACACTGTCATGCCTGCAAGACATAGAAGTTCTCAACTTGGCTCATAACAAGCTCTCTGGGGAGTTATCAGACGTACTCTGCTCTTTGAGAAGCCTTGCAAATCTAACTGTTGCTTACAATTTCTTTTCGGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGAAGGGACATGCAGAGACCTCAACCTGAGTGCTCTATGATCCCAGGGGGTAGCCTTAGTTGTCTCAGAATCCCCACTCCAAGGCCCCTTGTTTGTGGTTCAATGGCTGTAAGTAAGTCTAAGCACATTGATCCCATTTCCCCATCTCCTTGA 1284 0.4665 MENSCFLAFLILILHSITTKAVFGVGGGVGVGVGVGVGVGVGVGNGNGGGNGGTVWVGGGINSPEPPGSSVPKPEGAYTALQAWKSAITEDPLNILESWVGPNVCSYKGVFCANPQDEMVASAFSVVAGIDLNHANLQGTLVKELSLLSDLSLLHLNTNRFTGTVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGALPEELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVLCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSMIPGGSLSCLRIPTPRPLVCGSMAVSKSKHIDPISPSP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02302 427 FunFam Leucine-rich repeat extensin-like protein 1 78 242 - -
Phac4g02302 427 Pfam Leucine rich repeat 151 208 IPR001611 GO:0005515
Phac4g02302 427 Pfam Leucine rich repeat N-terminal domain 78 112 IPR013210 -
Phac4g02302 427 PRINTS Leucine-rich repeat signature 175 188 - -
Phac4g02302 427 PRINTS Leucine-rich repeat signature 315 328 - -
Phac4g02302 427 Gene3D Ribonuclease Inhibitor 244 365 IPR032675 -
Phac4g02302 427 Gene3D Ribonuclease Inhibitor 77 243 IPR032675 -
Phac4g02302 427 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 66 404 - -
Phac4g02302 427 SUPERFAMILY L domain-like 77 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02302 Phac-Chr4 49162115 49164265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02302 72 400 Leucine-rich Repeat extension Gene Families AT3G24480 49.851 8.45e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02302 - - gmx:100775544 728.398