Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02271 ATGGATGAGAGTGAGACACAAAAGGTAGAGATGAGAAGAAAAGAGAGAGCTTCCATTACCAGCATTTTGAGATATGCTGATTGGATTGATGTTGTGCTCATGCTAATGGGTGCTTTGGGAGCAATTGGAGATGGCATGTCCACAAATGTTTTGTTGCTGTTTGCAAGCCGTATCATGAACAGCTTAGGTTACAGTAAGAACCAACAAAGTACCAAGACTTACATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGTGATGGTTGTGGCATTCATGGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGGCAGGTTCTGAGAATTCGTTACAAGTACTTGGAAGCTGTCCTAAGACAAGAAGTAGGGTTTTTCGATTCCCAAGAAGCAACCACTTCTGAAATCATTAACAGCATATCAAAAGATACTTCTCTCATCCAAGAAGTTCTAAGTGAAAAGGTGCCACTATTTTTGATGCACTCATCATCATTCGTATCTGGGGTTGCATTTGCCACATATTTCTCATGGAGGTTGGCCTTAGTAGCATTTCCAACGGTGGTTTTGCTGATTATCCCTGGCATGATTTATGGAAAGTATCTTATCTATTTGTCAAAGTCCTCTGTGAAAGAATATGGCAAAGCAAACAGCATTGTAGAACAGGCACTTAGCTCCATCAAAACAGTGTATTCATTCACTGCAGAGAAGAGAATCAGTGGGAGATATTCAGACATATTGTGTAGGACTTCAAGTCTTGGAATCAAGCAAGGAATAGCAAAGGGTCTTGCAGTAGGAAGCACAGGTCTCTCTTTTGCAATATGGGCTTTCATTGCTTGGTATGGAAGCCGTTTGGTTATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTTGGAGTGGTGCTTCCTGATTTGAAGTACTTCACAGAAGCATCTGTTGCTGCTTCAAGAATATTTGACATGATTGATCGAATACCATTGATTGATGGAGAAGACACAAAAGGGCTGGTGTTAGATTGCATCAGTGGGAAGCTAGAGTTTGAGCAAGTGAAATTCACATACCCTTCTCGTCCAGATATGGTTGTGCTTAGTAATTTCAATCTACAAGTGGAAGCAGGGAAAACTGTTGCTCTAGTTGGTGCAAGTGGAAGTGGCAAGTCCACAGCAATAGCATTGATGCAAAGATTCTATGATGCAGATGAAGGTGTTGTGAGGGTTGATGGTGTAGACATAAAAAGCCTTCAGTTGAAATGGATTAGAGGGAAAATGGGGCTTGTGAGTCAAGAACATGCATTGTTTGGAACTTCCATAAAGGAGAATATTATGTTTGGGAAGACAGATGCTACCATGGATGAAATAGTTGCAGCAGCCTCAGCAGCCAATGCTCACAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACTAAGATTGGAGAAAGAGGAGCACTTCTTTCAGGAGGACAAAAGCAGAGAATAGCCATTGCAAGAGCCATCATAAAGAATCCTGTTATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATCACTGGTTCAGAATGCCCTCGATCAGGCCTCCATGGGGAGAACTACATTGGTTGTTGCACACAAACTATCAACTATTCGAAATGCAGACCTCATAGCAGTTGTTAGTGGTGGCCGCATCATTGAAACTGGCACACACAAGGAACTCATCAACAGACCAAATGGCCACTATGCAAACCTGGCTAAGTTACAGACACAATTGAGCATGGATGACCAAGATCAAAATTCAGAACTAGGTGCTGTTTCAGCAGCAAGAAGCAGTGCAGGTAGACCAAGCTCAGCAAGGTCAAGTCCTGCCATATTTCCAAAGTCACCATTGCCTGATGAAGCCACCCCATCTCCAGTTTCTCACCCTCCACCATCTTTCACAAGACTTCTTTCTCTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGAACCCTCTCAGCCATAGCCTTTGGCTCAGTTCAACCCCTATATGCTTTAACCATAGGGGGTATGATTTCTGCCTTTTTTGCCAAAAGCCATCTAGAAATGATGCATAGAATCAGGACTTATTCTTTGATTTTCTGTTCCCTTTCCCTTGCCTCTATTACTCTCAATCTCTTGCAACACTACAATTTTGCTTTTATGGGAGCCAAGTTAACCAAAAGAATAAGACTGCGCATGCTGGAGAACATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTGAAGTCCCTTGTGGCAGACAGACTCTCTTTACTAGTTCAAACCACTTCTGCTGTCACCGTTGCAATGATCATAGGGCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATTCTTTGCTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCAACAAAATTTGTTAAGGCACAGAATCAAAGTACACAAATTGCAGTGGAGGCAGTTTACAATCACAGAATTGTGACTTCTTTTGGGAGCATTACAAAAGTTCTACGGTTATTTGATGAGGCACAAGAAGAGCCAAGAAAGGAGGCAAGGAAGAAGTCTTGGCTAGCTGGCATAGGAATGGGTTCTGCTCAGTGCCTAACGTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTGGAAAAGAGAGAAATATCAGCTGGGGATGTCTTCAAAACATTTTTTGTGTTGGTGAGCACTGGCAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGTTCAACAGCAGTGGCATCTGTGTTTGAAATTCTTGACAGGAAATCACTAATTCCCAAGGCTGGGGATAACACTAGTGGCATTAAGTTGGAAAAGATGAGTGGAAAAATAGAGTTGAAGAATGTTGATTTTGCTTATCCAAGCAGGGCAGGGACACCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAACAAGTGTTGGGCTGGTTGGAAAGAGTGGATGTGGAAAATCAACAGTGATTGCCTTAGTTCAAAGATTCTATGATGTTGAGAGAGGTTCGGTTAAAGTGGATAATGTAGACATAAGGGAATTAGACATTCACTGGTACAGGCAGCACACTGCACTAGTGAGCCAAGAACCTGTGATATATTCTGGCAGCATACGTGAGAACATTTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTAGTTGAGGCTGCAAGAGCAGCAAATGCTCATGAGTTCATATCATCACTGAAAAATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTCGCAACCCAAAGATACTACTTCTAGATGAGGCAACAAGTGCCCTTGATGTGCAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGACTATGGTAGGAAGAACCACCATTGTTGTGGCACATAGGCTTAACACTATCAAAGAGCTTGATTCAATTGCTTATGTGTCTGAGGGCAAGGTCATGGAACAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAACCTTGCAAGCCATCAAATCCAAACTTAG 3708 0.4269 MDESETQKVEMRRKERASITSILRYADWIDVVLMLMGALGAIGDGMSTNVLLLFASRIMNSLGYSKNQQSTKTYMAEVEKCSLYFVYLGLAVMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFVSGVAFATYFSWRLALVAFPTVVLLIIPGMIYGKYLIYLSKSSVKEYGKANSIVEQALSSIKTVYSFTAEKRISGRYSDILCRTSSLGIKQGIAKGLAVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFDMIDRIPLIDGEDTKGLVLDCISGKLEFEQVKFTYPSRPDMVVLSNFNLQVEAGKTVALVGASGSGKSTAIALMQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHALFGTSIKENIMFGKTDATMDEIVAAASAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESESLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGRIIETGTHKELINRPNGHYANLAKLQTQLSMDDQDQNSELGAVSAARSSAGRPSSARSSPAIFPKSPLPDEATPSPVSHPPPSFTRLLSLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAKSHLEMMHRIRTYSLIFCSLSLASITLNLLQHYNFAFMGAKLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTVAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEEPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNTSGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGTSVGLVGKSGCGKSTVIALVQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRENILFGKQDATENEVVEAARAANAHEFISSLKNGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVSEGKVMEQGTYAQLRHKRGAFFNLASHQIQT* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02271 1235 CDD ABC_MTABC3_MDL1_MDL2 995 1232 - -
Phac4g02271 1235 CDD ABC_6TM_Pgp_ABCB1_D1_like 34 333 - -
Phac4g02271 1235 Gene3D - 350 599 IPR027417 -
Phac4g02271 1235 Pfam ABC transporter 1016 1162 IPR003439 GO:0005524
Phac4g02271 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 598 IPR027417 -
Phac4g02271 1235 CDD ABC_MTABC3_MDL1_MDL2 361 598 - -
Phac4g02271 1235 FunFam ABC transporter B family member 4 350 607 - -
Phac4g02271 1235 Gene3D ABC transporter type 1, transmembrane domain 22 898 IPR036640 GO:0005524|GO:0016020
Phac4g02271 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1232 IPR027417 -
Phac4g02271 1235 PANTHER ABC TRANSPORTER B FAMILY 6 683 IPR039421 -
Phac4g02271 1235 FunFam ABC multidrug transporter SitT 985 1233 - -
Phac4g02271 1235 MobiDBLite consensus disorder prediction 603 652 - -
Phac4g02271 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac4g02271 1235 Pfam ABC transporter transmembrane region 36 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac4g02271 1235 Pfam ABC transporter transmembrane region 672 941 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac4g02271 1235 MobiDBLite consensus disorder prediction 603 633 - -
Phac4g02271 1235 FunFam Putative ABC transporter B family member 8 638 980 - -
Phac4g02271 1235 CDD ABC_6TM_Pgp_ABCB1_D2_like 660 976 - -
Phac4g02271 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1231 IPR003439 GO:0005524
Phac4g02271 1235 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Phac4g02271 1235 FunFam ABC transporter B family member 1 21 354 - -
Phac4g02271 1235 Gene3D - 985 1235 IPR027417 -
Phac4g02271 1235 SMART AAA_5 1022 1214 IPR003593 GO:0016887
Phac4g02271 1235 SMART AAA_5 387 579 IPR003593 GO:0016887
Phac4g02271 1235 ProSitePatterns ABC transporters family signature. 1134 1148 IPR017871 GO:0005524|GO:0016887
Phac4g02271 1235 SUPERFAMILY ABC transporter transmembrane region 658 972 IPR036640 GO:0005524|GO:0016020
Phac4g02271 1235 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Phac4g02271 1235 SUPERFAMILY ABC transporter transmembrane region 22 344 IPR036640 GO:0005524|GO:0016020
Phac4g02271 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 671 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac4g02271 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02271 Phac-Chr4 48675945 48685945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02271 35 598 Calmodulin-binding Proteins AT2G36910 36.097 2.38e-97 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02271 K05658 - gmx:100801088 2212.96