Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02259 ATGGCAGAGGGGTCATCAAATGATGCAGGGAAGGGAAAAGGCATTGCCCGAGAGAAAGAATCTTGGAGAGAGTTTATGCAGAAGGATGAGATGCAGGTGGAGTTCGTGTTCACCATTGGGCATGTGAAAGACTTGGAGTTGAGCATGCCGTATAGGGCACAATTGACCAACGACAAGTGGAACCTGTTCCTGCGTGTGCCCTACTTGGAAGAAATCCTCTTGCAGTTCTTGAAAGAGGAAGAAGAAGAAGAGCTCAAAGAGGGTCTCCCAGTGACCGTCTATGACAAAGGGGGACACGAGTTCCCAATGATGCTCAAGAAATTCGACAAAGATTCCATCTCTTACTATGTGCTCAATCGAGGCTGGTTCAATTTCTGCGACCAGAAGCTCCTGCAGGAAAACGATGTTGTTGCACTGCGAACTTTTCGCCATGCAATAACTGACAAGCTATGCTTCCTTGTTACTTTCACAAAATTGAGGTAA 483 0.4658 MAEGSSNDAGKGKGIAREKESWREFMQKDEMQVEFVFTIGHVKDLELSMPYRAQLTNDKWNLFLRVPYLEEILLQFLKEEEEEELKEGLPVTVYDKGGHEFPMMLKKFDKDSISYYVLNRGWFNFCDQKLLQENDVVALRTFRHAITDKLCFLVTFTKLR* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02259 160 Pfam B3 DNA binding domain 75 142 IPR003340 GO:0003677
Phac4g02259 160 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 74 156 IPR005508 GO:0003677
Phac4g02259 160 Gene3D - 54 158 IPR015300 -
Phac4g02259 160 CDD B3_DNA 88 158 IPR003340 GO:0003677
Phac4g02259 160 SUPERFAMILY DNA-binding pseudobarrel domain 74 149 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02259 Phac-Chr4 48540704 48541186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02259 48 158 B3 DNA Binding Superfamily AT4G03170 33.333 4.86e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac4g02259 B3 5.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02259 - K19998 pvu:PHAVU_004G169500g 286.96