Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02258 ATGGCAGCAAGTTCATCAAACTCAGGAAGGGGAAAAAGCATGGTGGAAGGAAAGAAAGAAGCAAAGGAAATCCAATTCAACGATGAGTTGCAGCTTGAGTTCATACTTGATGCAGGAATTGTGAAAGACTGCGAATTGAGTTTGCCCTATGGGGTGCAACTGACCAATGACAAGTGGAACCTGTTCTTGCCATTGCTAGGGTTTGAAGAAACCCTAATAGGGTTTTTGAAGGAAGAAGAAGACGTGAGAGAAGGGATCCAAGTGAACGTGTACGATAGAGGAGGCCATGAATTCGAAATGATGCTGAAGAAATGGGTGAAAGACTCAAATGAGTTCTACGTGCTCAACAGAGGCTGGTTCACTTTCTGCAACCAACATGGATTAGGGCAAGAAGATCTCATAGCTTTGCGCGGTTTTCGCCATTCCATAACAGACGTGTTATCTTTTGTTGTTACTTTCAGAAGAATGAGGTAA 474 0.4325 MAASSSNSGRGKSMVEGKKEAKEIQFNDELQLEFILDAGIVKDCELSLPYGVQLTNDKWNLFLPLLGFEETLIGFLKEEEDVREGIQVNVYDRGGHEFEMMLKKWVKDSNEFYVLNRGWFTFCNQHGLGQEDLIALRGFRHSITDVLSFVVTFRRMR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02258 157 CDD B3_DNA 75 155 IPR003340 GO:0003677
Phac4g02258 157 ProSiteProfiles B3 DNA-binding domain profile. 87 157 IPR003340 GO:0003677
Phac4g02258 157 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 74 153 IPR005508 GO:0003677
Phac4g02258 157 SUPERFAMILY DNA-binding pseudobarrel domain 79 152 IPR015300 -
Phac4g02258 157 Gene3D - 45 157 IPR015300 -
Phac4g02258 157 Pfam B3 DNA binding domain 81 139 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02258 Phac-Chr4 48537936 48538417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02258 57 153 B3 DNA Binding Superfamily AT4G03170 31.633 2.99e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac4g02258 B3 4.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02258 - K00986 pvu:PHAVU_004G169500g 184.882