Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02256 ATGAATCAGCTTGGTGTTATCCTTTTTGTTCTTTCAATCTTGTTCCTACATGTTAGAGCACAGAGTACTGCACCTTCAGGAGATGCTGTGTCCAATTTCCAGCCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTGTCATGTTTCTACTGACATTCTTTCTTCTCATGTATGCAAAATTCTGTCAACACCGCGGCTCTTCAGCTTCTCTTGGGGACCAAGAAAATTTACCAACTTTTGTGAGATCAAGGTCTAGATTCTCAGGAATTGACAAGACTGTCATAGAATCCCTCCCCTTCTTTAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGGCTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAGTTCTCAGACTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAGGCACTCTAGCTGTCCTATTTGCAGGCACAAGGTCAACCCTGAGGACCACACTACCTTCACATATTCAAGCAGTTTAAGGAGGCTAGCCAACCAATCAGGCCTAGGTGAAGAATCTAACTTAGACATCTTTGTCCACAGAGAGGAAGAACATCATGGTTCATCAAGATTCAGTGTTGGAAGCAGCTTTCGGAAAATGGGAAAGGGTGTCAAGGAAGAAGAATTGCTCATCCAAAAAGGGGCAGAGGATAGTGATGGTAACCAGAAGGGGTATCATAAACACAACCACATGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTTTGAATTCAGAGATGCTGAATGCTACATCAAGCAACAGATTCAGCAACTTCGAATCAAATGCAGACTTGATGTCAACCTCAAGAGAGGTGGTAGAAAATGAGCAAATTAAGAACATCAAGGAGGAGATGGAGAGGAAGATTTCCTTCGAGAGCAAAGTTAGTGCACTAAACAACATCAAATCAGTTTCAGAAAAGGATCCTCCTTTTACATCAGATTCTGCAGGAAACTCAAGTCATGCACCAAAGTATGTGAACCCTGGTGAGAAAAGGTCAATATCAGAAATCACTGCTGTCTCTAGATTTGGAGATTTAGGCATGAAAATGAGGGTCTTCAAGGATTCTTCTTCTCTTCAAAACAACCTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATAGCTAAAAGAACAGCTCAATGGTTTGTGAATAGAGAAACAAGGTCTCAGCTATCTCTGGATAAACAACAACCATTAGATCTATAA 1281 0.413 MNQLGVILFVLSILFLHVRAQSTAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGSSASLGDQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPEDHTTFTYSSSLRRLANQSGLGEESNLDIFVHREEEHHGSSRFSVGSSFRKMGKGVKEEELLIQKGAEDSDGNQKGYHKHNHMITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFSNFESNADLMSTSREVVENEQIKNIKEEMERKISFESKVSALNNIKSVSEKDPPFTSDSAGNSSHAPKYVNPGEKRSISEITAVSRFGDLGMKMRVFKDSSSLQNNLKEERMRQIWFPIAKRTAQWFVNRETRSQLSLDKQQPLDL* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02256 426 FunFam RING-H2 finger protein ATL43 89 163 - -
Phac4g02256 426 MobiDBLite consensus disorder prediction 328 346 - -
Phac4g02256 426 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Phac4g02256 426 SMART ring_2 114 155 IPR001841 -
Phac4g02256 426 SUPERFAMILY RING/U-box 93 162 - -
Phac4g02256 426 CDD RING-H2_EL5-like 113 156 - -
Phac4g02256 426 Pfam Ring finger domain 113 156 IPR001841 -
Phac4g02256 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 412 - -
Phac4g02256 426 MobiDBLite consensus disorder prediction 328 353 - -
Phac4g02256 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02256 Phac-Chr4 48413093 48414851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02256 6 422 C3H Transcription Factor Family AT4G28890 46.742 2.92e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02256 K10664 - gmx:100803207 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac4g02256 4 48413093 48414851 Phac4g02256 4 48413093 48414851 ECH