Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02222 ATGTCTGTGCCACTGGAACAAGGCTATGTAGGCTTATCAGAGGTTCCTGCAATGGAAGGTTCTGACAAGTTTTCTCAGAGGACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTACCAGGTTCCGAGTCACCGGAGAGAGATGGGGGTGTGGAAGAAAAGAATGTGCACCCTTTAGGCATGGTGAAGAATTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAGTGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGGTTGGGAAAAGATTGTGGCTTGTTCTCACCAAGGGGTGTTGGTGCTAGTGCTGGCAAGGCTGAGTCTACCAACCAACAAACATCTGTTGTTAAAGATAAAGTTCCTCTGCCTCCAAAACCATTGAATGAGAAGAAACCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCCAAAGAAAGATGATGATGCAGAAGCCAAATCTGGATGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAATCTTTGGAACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTACTTGTTTTACAATCAGTCAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGCTGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCATGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 924 0.4621 MSVPLEQGYVGLSEVPAMEGSDKFSQRTSGGLNLKATELRLGLPGSESPERDGGVEEKNVHPLGMVKNLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVGLGKDCGLFSPRGVGASAGKAESTNQQTSVVKDKVPLPPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPPKKDDDAEAKSGCLYVKVSMDGAPYLRKVDLKIFGTYMELSSALEKMFTCFTISQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02222 307 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Phac4g02222 307 Gene3D - 181 300 - -
Phac4g02222 307 MobiDBLite consensus disorder prediction 113 153 - -
Phac4g02222 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 294 IPR003311 GO:0005634|GO:0006355
Phac4g02222 307 SUPERFAMILY CAD & PB1 domains 185 288 - -
Phac4g02222 307 MobiDBLite consensus disorder prediction 20 57 - -
Phac4g02222 307 FunFam Auxin-responsive protein 182 299 - -
Phac4g02222 307 Pfam AUX/IAA family 37 298 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02222 Phac-Chr4 48132587 48136040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02222 82 297 B3 DNA Binding Superfamily AT4G23980 24.336 2.57e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac4g02222 AUX_IAA 7e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02222 K14484 - gmx:100803754 532.717