Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02215 ATGGATCCTCCGACCAAGAGTTGGAGCATCCACACGCGCTCCGAGATAACTGCCAAGTACGAGGTTATTGGTCGGGTCGGATCGGGTGCCTACGCCGACGTGTACGACGGACGGCGCCACTCGGACGGTGCGGCGGTGGCGCTGAAGGAGGTGCACGATTCCCACTCGGCGTCTCGCGAAATCGAAGCTCTGCGGGTCCTGAAAGGGTCCCAAAACGTGGTCGTTCTACACGAGTTCTTCTGGCGCGAGGACGAGGATGCGGTTCTCGTGCTCGAGTTTCTCGGAACCGACCTCGCCGCCGTGATCGGAGAAGGTGGTGTCGGCGTCGGTGAGGTTAAGAGGTGGATGTTGCAGGCTCTGAGTGCTGTGGATGAGTGCCACCGGAATATGATCGTGCATAGAGACTTAAAGCCCGCGAATTTTTTGGTTTCCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTTGTGGAGTCTGGATTCGATGGTCCCCAGGAAGATGATGATGTTTCAAATAGTGAAAGGTCACTCCAACAACATCGTGAAGCTATTTCCCAACTAGAGAACTTAAATCAAACTGGGCAGGAAAACCCAGATCACAGAAGCTTGAGTCATGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCGAATATCCATGATGGAAACACCTCATGTCTTGCAACGTGCACAGCGAGTGACATAGATGATGAACTCTGCAAAGGTTCTTTTACCTATGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACACGCTGGTTTCGAGCCCCTGAGTTACTGTATGGATCCACAGACTATGGTTTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAACTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGTGATGTAGACCAGCTTAGCAGAATTGTTAGTGTTTTGGGGAACATCAATGAGGAAACTTGGCCTGGCTGTTCCAAACTTCCTGATTATGGAAGTATCTCTTTTTCTAAGGTGGAAAACCCTTGTGGTCTTGAAGCATGCATGCCCAATTGCACCTCTGATGAAGTTTCCTTGGTCAAAAGATTGGTTTGTTATGATCCAATTAAGAGAGCCACAGCAATGGAGTTACTTCAAGACAAGTACCTAAGTGAAGTACCACTTCCTGTTCCAATTTCTGATTCTGATTTGGATGAGTTTGGAACTTTGAATATCACCACAACTGATTCTGATCTATCTGCACAAATCTCTTGA 1314 0.4779 MDPPTKSWSIHTRSEITAKYEVIGRVGSGAYADVYDGRRHSDGAAVALKEVHDSHSASREIEALRVLKGSQNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGEGGVGVGEVKRWMLQALSAVDECHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVESGFDGPQEDDDVSNSERSLQQHREAISQLENLNQTGQENPDHRSLSHEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTASDIDDELCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVLGNINEETWPGCSKLPDYGSISFSKVENPCGLEACMPNCTSDEVSLVKRLVCYDPIKRATAMELLQDKYLSEVPLPVPISDSDLDEFGTLNITTTDSDLSAQIS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02215 437 FunFam Cyclin-dependent kinase F-1 11 105 - -
Phac4g02215 437 Coils Coil 174 201 - -
Phac4g02215 437 Gene3D Transferase(Phosphotransferase) domain 1 105 410 - -
Phac4g02215 437 SUPERFAMILY Protein kinase-like (PK-like) 13 409 IPR011009 -
Phac4g02215 437 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Phac4g02215 437 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac4g02215 437 PANTHER CELL DIVISION PROTEIN KINASE 19 408 - -
Phac4g02215 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Phac4g02215 437 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac4g02215 437 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Phac4g02215 437 Pfam Protein kinase domain 274 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac4g02215 437 Pfam Protein kinase domain 20 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02215 Phac-Chr4 48075825 48078710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02215 4 436 Core Cell Cycle Gene Families AT4G28980 56.329 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Phac4g02215 Pkinase 6.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02215 - - gmx:548056 747.273