Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02178 ATGATGGAACACAACATCATCGGCAACACCAACAACGGGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCACCACCGATAAACTCATCACGTGGGGCCCAGCCAACAACAGCTTCATCGTCCTCGATCCCCTCGACTTCTCCCACTCACTGCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGCTTTCAGAAAGGTGGACCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAGCACGGCGGAGGGAGGAGCAACAATTCGCAATCGCATTTGCATGCCCTGAAGTTTGAGGAGTTGGACGACGATGCCATGGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAAGCTTTGGAGGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAACAAATGATGGCTTTTCTGTCAAAGGTTGTGGAAGACCCGCAGGTTCTCTCTCGGATTCTCCGAGAAAGAGAAAAAAAACACCTCGGCGAGAAAAAGCGACGCCTCCTCATTCCTCCGCCTTCGACGGCGGCGACCTCCTCCTCGTCCTCCTCCGGCATCAAGACGGAGTTCGAAGAGGACGAAGGTAACATCATGTCTTCATCGCCGGACACGGGTTTGGAAATCGATAATAATAATATTATTTGTTCGCCGGTGACGGCGGGGTATTGGGGGGAACAAGGGTGTTATGGGTATAATTGCGGCGGAGTAACGACGCCGTTGACGGTGGTGACGCCGGCTGCGCCGGCGATGGGTGGAGGATATTTGGGGCGTGGGAGTTTGTTTGGGGAAATGGCGGCGGAGGGGAGTGCGCTGCCGCCTTATCCGTTTTCGCTGTTGGAAGGTGGGTTTTAG 951 0.5363 MMEHNIIGNTNNGIAPFVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYAFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSNNSQSHLHALKFEELDDDAMVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILREREKKHLGEKKRRLLIPPPSTAATSSSSSSGIKTEFEEDEGNIMSSSPDTGLEIDNNNIICSPVTAGYWGEQGCYGYNCGGVTTPLTVVTPAAPAMGGGYLGRGSLFGEMAAEGSALPPYPFSLLEGGF* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02178 316 Coils Coil 130 164 - -
Phac4g02178 316 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g02178 316 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g02178 316 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g02178 316 MobiDBLite consensus disorder prediction 196 231 - -
Phac4g02178 316 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 230 IPR027725 -
Phac4g02178 316 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g02178 316 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g02178 316 SUPERFAMILY "Winged helix" DNA-binding domain 12 106 IPR036390 -
Phac4g02178 316 Gene3D - 9 107 IPR036388 -
Phac4g02178 316 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac4g02178 316 FunFam Heat shock transcription factor 1 10 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02178 Phac-Chr4 47845060 47846799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02178 14 200 HSF AT3G24520 64.921 8.39e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac4g02178 HSF_DNA-bind 3.7e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02178 K09419 - gmx:100794896 521.931