Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g02033 ATGCCTGTTGTGACAGAACACATGAAGTGGAGAAGACCAAGAAACCAATTCAGATGCCCCATTTCAGACAATGATCAAAATCCTCAAAACCCTTCAACAATCCAATCCTCTCACACCAAATCCACTATCTCTGCTCTCTTATCTTCATTCTCCACCCCTAATGAAACCACACATGTCAGAGACCAAAACAGCAACAAAAACAACAGAAAATTCTCTACAGCAACCTTTAGAGGACTCGGTTGCACTGTCAAAGCATCCCAGAAGGTTTCGGTGCCCACTGTGATTCGGTCCTCGGCAGATTGGGAAGGGAAGAGGAACAGGAAGAAGAAGCACAGGAGGAACAGTAACAGTAACAAAACATGTGATGGAGTCGTTCATGATGTTTGTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCTGGAATTGGGTTCTCAACAGATACTGCTGCTGCTGCTGCATCTGTGGACTGTGTTGTGGCTAGGAAGAATGTGTCTGCAAGAGGAAAACTTGATGTGGTGGAGAGGGAGCGTTCATCTTATTTTGGAAGGCGCACTGTAAGGCCAGAAAGCTTCCCTTTTCTGGATGATGAATCTGATATCTTCACAGCACGTAGTGGGTTAGACCCTTTTGGAACTGCTAGATTCTATCGCCATGTTCCACATCCTTCTCCTGATGGTCTTGCTGAGATAATGATAATCAGAGGAAGAAGAATAATAATGGGGGGTCGACTAAACTCACACGATCAATTTAGGGACTGGAGACTTGATATTGATGACATGTCATACGAGGAATTGCTTGAGTTGGGTGAGAGAATAGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGAAAAGTTAAACTTTCAAGTTCAAATGATGCATCAAAGGATCAAGAAGGCAAAAACTGCAGTGTTTGTCAGGAGGAGTATGAACCACATGATGAGTTGGGGAAATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGGTTCGATCCTAA 1080 0.4343 MPVVTEHMKWRRPRNQFRCPISDNDQNPQNPSTIQSSHTKSTISALLSSFSTPNETTHVRDQNSNKNNRKFSTATFRGLGCTVKASQKVSVPTVIRSSADWEGKRNRKKKHRRNSNSNKTCDGVVHDVCGGTCVDFQDVWCGPGIGFSTDTAAAAASVDCVVARKNVSARGKLDVVERERSSYFGRRTVRPESFPFLDDESDIFTARSGLDPFGTARFYRHVPHPSPDGLAEIMIIRGRRIIMGGRLNSHDQFRDWRLDIDDMSYEELLELGERIGHVSTGLKEDEMGHNIRKVKLSSSNDASKDQEGKNCSVCQEEYEPHDELGKLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g02033 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 29 355 IPR045191 GO:0061630
Phac4g02033 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 358 IPR013083 -
Phac4g02033 359 FunFam E3 ubiquitin-protein ligase rnf12-A 278 357 - -
Phac4g02033 359 Pfam Ring finger domain 310 352 IPR001841 -
Phac4g02033 359 SMART ring_2 311 351 IPR001841 -
Phac4g02033 359 MobiDBLite consensus disorder prediction 19 70 - -
Phac4g02033 359 MobiDBLite consensus disorder prediction 17 70 - -
Phac4g02033 359 SUPERFAMILY RING/U-box 304 357 - -
Phac4g02033 359 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g02033 Phac-Chr4 46866149 46873047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g02033 4 266 C3H Transcription Factor Family AT1G73760 38.380 3.00e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g02033 - - gmx:100818517 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac4g02033 4 46866149 46873047 Phac4g02033 4 46866149 46873047 ECH