Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01996 ATGGGCATCAAGGATCTCCTGAGGTTCATGAAACCTTACATCGAACCTGTCCACATCAAGAAGTACGCTGGAAAACGCGTGGGTATTGATGCGTATTCGTGGCTTCACAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTTGATTCTAGTAGTGTAAGGAAGTTGCGATACATTGAATACTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCGGTTGTTGTTTTTGATGGTGGCAATATTCCTTGCAAGGCAGCAACTGAGGAAGAGAGGAACAGAAAAAGAAGGGCTAATCGAGAATTGGCAATGACGAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCGGTTATGGCACATCAGTTAATTCAGACCCTTAAATCAGAGAAAATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACTTGTCTCACCTTGGAGTAGAAAATGGTGGGGTTGCAGCAGTGATCACAGAAGATAGTGATCTAATAGCATATGGCTGTCCAGATATTATTTTTAAGATGGACCGTCATGGGAATGGTGAAAAAATAGAGTTAGAGAAGGTTTTTTCTGCTGAGTCTGGTAGACCTTCATTTCGGAGTTTCAATAAGGAACTTTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCCGGAATTGGTATTGCTCGAGCCCATGCTTTGGTTTCCAAATATCGGAACCTAGATCGTATATTGTCCGTTCTTAAGCTCGAGAAAGCCGACCAAGTGCCTGAAGATTATGCCAAAACCTTTCAAGAGGCTGTAGCAGTTTTTCAGCATGCTCGAATTTATGATACCAATGCTAAAGAGCTGAAACACATGAAGCCTCTTCCACAAAATTTTCTTGAGTCACTTGATGGGAAACTCGATTTCTTGGGGCCAGAAATTCCCCCATCTATAGTCAAAGCTATAGCTGAAGGAAACTTGAATCCATCAACTAAGAAAACCTTTGATAAGTCTGAATGTTCTAGATTTCCTCTACACCCCACTGATCTCCAAAGCTTTGATCAAATCCAGAAAGCTGAAGTTCCTGCACCATCTAGACTAAAGAATAGCTTTTCAATCATTGCCTCCCAATACACCAGAGAAAATAGTACAGTGACTAGGCTCTTAGATGAAGACAAGTATTCCAATGAAGCCTTGGCACTGGAGAAACTAATCAAGCCATTGGAAACAATTGGAACAGAAGAAAAAACCATTATATCTGATAACACTCCTTTGAAGGTTCCTGATAACAATCCATTCAGGATAAGAAAAAATGAGGAGAGATATCAGACAAAGGACACTATTGAAAAGATTGTTGTTGAAAGCAGCATGGAATATATTGACTTGTGCACGTCTCCGGATAACTTTCAAGAAGAGGGGTCCGATGAGAATCACTCAAGGAAAAGGAAGTTTCAGAACATTTTGTCAGATAAAGTTGAAGCCACTGATGAACTGGTTTCAGGAGTGACTGAAGCAGAAAAATGTGATGTTGTATGTTTGACAGAATCCCCAGAAAGTGTAACTTCTGGGACTAAGATGATTGCTCATTTGAAAGGAAGAAGTGAAAGTAAAAAGAAATCCAATAGAAGAAGCAACAGCAAGAAAACGGGCAGTAATACCAACAGAACACTTTTGAATTTCTTTTCTAGAGTGTAA 1731 0.4038 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSSSVRKLRYIEYFMHRVNLLRFYKITPVVVFDGGNIPCKAATEEERNRKRRANRELAMTKLKEGNVGAASELFQRAVNITPVMAHQLIQTLKSEKIEFVVAPYEADAQLAYLSHLGVENGGVAAVITEDSDLIAYGCPDIIFKMDRHGNGEKIELEKVFSAESGRPSFRSFNKELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKADQVPEDYAKTFQEAVAVFQHARIYDTNAKELKHMKPLPQNFLESLDGKLDFLGPEIPPSIVKAIAEGNLNPSTKKTFDKSECSRFPLHPTDLQSFDQIQKAEVPAPSRLKNSFSIIASQYTRENSTVTRLLDEDKYSNEALALEKLIKPLETIGTEEKTIISDNTPLKVPDNNPFRIRKNEERYQTKDTIEKIVVESSMEYIDLCTSPDNFQEEGSDENHSRKRKFQNILSDKVEATDELVSGVTEAEKCDVVCLTESPESVTSGTKMIAHLKGRSESKKKSNRRSNSKKTGSNTNRTLLNFFSRV* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01996 576 SMART xpgn3 1 102 IPR006085 GO:0004518
Phac4g01996 576 CDD H3TH_FEN1-like 223 295 - -
Phac4g01996 576 SMART xpgineu 141 213 IPR006086 GO:0004518
Phac4g01996 576 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 349 IPR036279 -
Phac4g01996 576 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Phac4g01996 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Phac4g01996 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Phac4g01996 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Phac4g01996 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Phac4g01996 576 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Phac4g01996 576 Coils Coil 91 111 - -
Phac4g01996 576 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 546 IPR006084 -
Phac4g01996 576 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Phac4g01996 576 Gene3D - 1 212 - -
Phac4g01996 576 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Phac4g01996 576 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Phac4g01996 576 Gene3D - 218 291 - -
Phac4g01996 576 FunFam Exonuclease 1, putative 1 213 - -
Phac4g01996 576 FunFam exonuclease 1 218 291 - -
Phac4g01996 576 MobiDBLite consensus disorder prediction 535 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01996 Phac-Chr4 46605102 46610290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01996 1 315 Core DNA Replication Machinery Family AT5G26680 23.780 5.36e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01996 K10746 - gmx:100817932 931.013