Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac4g01978 | ATGGAGCCATCCTCGATCTCCCCACCGCCAGCTCCGCCAGCAACCGCCGTCCCCTTTCCGGCCGACCCCAACGACCACCTCCCGCCGCCCATTCCCGAGCCGCCGGCTAATCACCCGCCGTACGCCGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAGGACGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTTTACAGGGACCAGCTTCCGCCGAATCACTCCAACTTGTTGACTCAGCACTTGACTCGGATGAAGACCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCAGCTGCCGCTGCAGCTGCTGCGGAGGACGCTGTGGCTGGGCCCTCTGCTTCGGCTACTCCCAGGCCCAGAGGCCGCCCTCGCAAGGCCCAAACCCCTGTCCACAACCTGCCCCAGCCTCTCGCGCAGGTTCAGGACGATGTAATGCCGTCGCTTCAGCAGAATGCTGAGCCTGTCTGGGCCGCGCTCGGGCTTGCTGACGAGCCTGTGCAAGCTGAGAGCAGCAAGAAGCGTCCGGGCCGACCGAAGAAATACGCAACTGGCACCCCTGGAACGGGGCGGAGAGGCCGTCCTGCTGGCTCTGGAAAAGGCCCGGGTCGTCCTCCTAAGCCCAAGCCTGTTGATTTAGATACTTCTGCCTCTGCCGGGCCGAAGAGACGCCCGGGCCGCCCGCCTAAGGACCAGAGCCAAGCAACTCAAATTCCGTTTGCTCCATCTACACCAACTGCTGGTGCTGTTGTGCCGGGCTCAGAGCCCGTGGCAGAACCGGTTCCTGCTGGTGATGGAATTATACTCGGGCCTAGAGTTCGAGGTCGACCGAAGAAGTTTGCTGATGAGATTATTCCCTCTGGCCGAGGCAGGGGAAGGGGTCGAGGGCGTGGCCGTGGGCGTGGTGGTGGTTTGCAGCTCATAAAATTCGGAGTTAGGTCCGTTGGCCGCCCGAGGAAGGTGACAACTTTTGGTGGAGATCAACAAAATGCTGTTAATGAAGAGCTGAAGAGGAAGCTCGAACACTTTCAATCAAAGGTGAAGGAATCCCTGGCAGTGATTAAGCCTCATTTTAACCATCAAAGTCCAGTCACTGCAATTGCAGCTATTCAAGATTTGGAAGAGCTGGGAACTATGGACCTCAATGCACCACTAAGGGATGAAACAATTCCTCTGCAACAGGAGGTCCCACCACCACAGGCACCGGTGCAGCAGCATCAGGCGCAGCCACCACAGCAACAACCTCCACCACCACAGCAGCAGCCACCACAGCAACATCTGGCACCATCACCACTGCAAACTCAGCCACCGCTATTTCAGCAACCATTTCCCTCGTTTCAGCTGCAGCCGGCATTCCATCATCAGCAGCCACAGCTGCAGTTCCAGCAGCCACCACAGCAGCACCAGCTATTCCAGGCACCCCCATCGCACCACCAACAGTTTCATCCTTAG | 1491 | 0.5828 | MEPSSISPPPAPPATAVPFPADPNDHLPPPIPEPPANHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYRDQLPPNHSNLLTQHLTRMKTSGMLVMVKKSYALPRSAAAAAAAAAAEDAVAGPSASATPRPRGRPRKAQTPVHNLPQPLAQVQDDVMPSLQQNAEPVWAALGLADEPVQAESSKKRPGRPKKYATGTPGTGRRGRPAGSGKGPGRPPKPKPVDLDTSASAGPKRRPGRPPKDQSQATQIPFAPSTPTAGAVVPGSEPVAEPVPAGDGIILGPRVRGRPKKFADEIIPSGRGRGRGRGRGRGRGGGLQLIKFGVRSVGRPRKVTTFGGDQQNAVNEELKRKLEHFQSKVKESLAVIKPHFNHQSPVTAIAAIQDLEELGTMDLNAPLRDETIPLQQEVPPPQAPVQQHQAQPPQQQPPPPQQQPPQQHLAPSPLQTQPPLFQQPFPSFQLQPAFHHQQPQLQFQQPPQQHQLFQAPPSHHQQFHP* | 497 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac4g01978 | 496 | SMART | h15plus2 | 35 | 102 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 288 | 303 | - | - | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 177 | 318 | - | - | |
| Phac4g01978 | 496 | Gene3D | - | 34 | 119 | IPR036388 | - | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 393 | 496 | - | - | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Phac4g01978 | 496 | SUPERFAMILY | "Winged helix" DNA-binding domain | 32 | 110 | IPR036390 | - | |
| Phac4g01978 | 496 | Coils | Coil | 346 | 366 | - | - | |
| Phac4g01978 | 496 | CDD | H15 | 36 | 104 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Phac4g01978 | 496 | PRINTS | AT-hook-like domain signature | 282 | 292 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | PRINTS | AT-hook-like domain signature | 131 | 141 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | PRINTS | AT-hook-like domain signature | 233 | 244 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | PRINTS | Histone H5 signature | 51 | 68 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Phac4g01978 | 496 | PRINTS | Histone H5 signature | 24 | 45 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Phac4g01978 | 496 | PRINTS | Histone H5 signature | 126 | 140 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Phac4g01978 | 496 | PRINTS | Histone H5 signature | 182 | 201 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Phac4g01978 | 496 | SMART | AT_hook_2 | 284 | 296 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | SMART | AT_hook_2 | 202 | 214 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | SMART | AT_hook_2 | 325 | 337 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | SMART | AT_hook_2 | 186 | 198 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | SMART | AT_hook_2 | 131 | 143 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | SMART | AT_hook_2 | 235 | 247 | IPR017956 | GO:0003677 | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 439 | 496 | - | - | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 122 | 165 | - | - | |
| Phac4g01978 | 496 | Pfam | linker histone H1 and H5 family | 38 | 100 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Phac4g01978 | 496 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 37 | 107 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Phac4g01978 | 496 | PANTHER | HISTONE H1 | 20 | 245 | - | - | |
| Phac4g01978 | 496 | FunFam | Histone H1.2 | 34 | 115 | - | - | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 408 | 438 | - | - | |
| Phac4g01978 | 496 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac4g01978 | Phac-Chr4 | 46456215 | 46462016 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac4g01978 | 44 | 109 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 39.394 | 3.32e-06 | 47.0 |