Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01977 ATGGAGCCATCCTCGATCTCCCCACCGCCAGCTCCGCCAGCAACCGCCGTCCCCTTTCCGGCCGACCCCAACGACCACCTCCCGCCGCCCATTCCCGAGCCGCCGGCTAATCACCCGCCGTACGCCGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAGGACGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTTTACAGGGACCAGCTTCCGCCGAATCACTCCAACTTGTTGACTCAGCACTTGACTCGGATGAAGACCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCAGCTGCCGCTGCAGCTGCTGCGGAGGACGCTGTGGCTGGGCCCTCTGCTTCGGCTACTCCCAGGCCCAGAGGCCGCCCTCGCAAGGCCCAAACCCCTGTCCACAACCTGCCCCAGCCTCTCGCGCAGGTTCAGGACGATGTAATGCCGTCGCTTCAGCAGAATGCTGAGCCTGTCTGGGCCGCGCTCGGGCTTGCTGACGAGCCTGTGCAAGCTGAGAGCAGCAAGAAGCGTCCGGGCCGACCGAAGAAATACGCAACTGGCACCCCTGGAACGGGGCGGAGAGGCCGTCCTGCTGGCTCTGGAAAAGGCCCGGGTCGTCCTCCTAAGCCCAAGCCTGTTGATTTAGATACTTCTGCCTCTGCCGGGCCGAAGAGACGCCCGGGCCGCCCGCCTAAGGACCAGAGCCAAGCAACTCAAATTCCGTTTGCTCCATCTACACCAACTGCTGGTGCTGTTGTGCCGGGCTCAGAGCCCGTGGCAGAACCGGTTCCTGCTGGTGATGGAATTATACTCGGGCCTAGAGTTCGAGGTCGACCGAAGAAGTTTGCTGATGAGATTATTCCCTCTGGCCGAGGCAGGGGAAGGGGTCGAGGGCGTGGCCGTGGGCGTGGTGGTGGTTTGCAGCTCATAAAATTCGGAGTTAGGTCCGTTGGCCGCCCGAGGAAGGTGACAACTTTTGGTGGAGATCAACAAAATGCTGTTAATGAAGAGCTGAAGAGGAAGCTCGAACACTTTGTGAGTTGA 1077 0.6007 MEPSSISPPPAPPATAVPFPADPNDHLPPPIPEPPANHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYRDQLPPNHSNLLTQHLTRMKTSGMLVMVKKSYALPRSAAAAAAAAAAEDAVAGPSASATPRPRGRPRKAQTPVHNLPQPLAQVQDDVMPSLQQNAEPVWAALGLADEPVQAESSKKRPGRPKKYATGTPGTGRRGRPAGSGKGPGRPPKPKPVDLDTSASAGPKRRPGRPPKDQSQATQIPFAPSTPTAGAVVPGSEPVAEPVPAGDGIILGPRVRGRPKKFADEIIPSGRGRGRGRGRGRGRGGGLQLIKFGVRSVGRPRKVTTFGGDQQNAVNEELKRKLEHFVS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01977 358 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac4g01977 358 MobiDBLite consensus disorder prediction 288 303 - -
Phac4g01977 358 Coils Coil 346 358 - -
Phac4g01977 358 MobiDBLite consensus disorder prediction 177 318 - -
Phac4g01977 358 MobiDBLite consensus disorder prediction 1 39 - -
Phac4g01977 358 CDD H15 36 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac4g01977 358 PANTHER HISTONE H1 20 245 - -
Phac4g01977 358 SMART AT_hook_2 284 296 IPR017956 GO:0003677
Phac4g01977 358 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Phac4g01977 358 SMART AT_hook_2 325 337 IPR017956 GO:0003677
Phac4g01977 358 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Phac4g01977 358 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Phac4g01977 358 SMART AT_hook_2 235 247 IPR017956 GO:0003677
Phac4g01977 358 PRINTS Histone H5 signature 182 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Phac4g01977 358 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Phac4g01977 358 PRINTS Histone H5 signature 126 140 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Phac4g01977 358 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Phac4g01977 358 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Phac4g01977 358 PRINTS AT-hook-like domain signature 282 292 IPR017956 GO:0003677
Phac4g01977 358 PRINTS AT-hook-like domain signature 233 244 IPR017956 GO:0003677
Phac4g01977 358 MobiDBLite consensus disorder prediction 122 165 - -
Phac4g01977 358 SUPERFAMILY "Winged helix" DNA-binding domain 32 110 IPR036390 -
Phac4g01977 358 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac4g01977 358 FunFam Histone H1.2 34 115 - -
Phac4g01977 358 Gene3D - 34 119 IPR036388 -
Phac4g01977 358 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac4g01977 358 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01977 Phac-Chr4 46456215 46462016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01977 44 109 Single Myb Histone (SMH) Gene Family AT1G49950 39.394 2.78e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01977 - - vun:114182142 475.322