Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01875 ATGTTAGCGAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGCCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCCCTGTCGCCAAAGACTTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGAAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACCTGCTTGCACCATGATCCTTGTCATGCTTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGTACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCCTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCCTCCGCGTGCCTCTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGAATCATAATACCAAAGCCAACAGAAGCACCCACAATTTTCATGAATAACCCTACTGCTGCTATCACCACTGCTGAAACCTCATCCAAGAACAACAACAAACTCCACCCCAACTTGGATCTCCAACTCTCAACTCCCACCACCACCACCAACAACAACAACAGTTCAAATGTTGCAAACCCCATTGATGCTTTAATATCAACATCGTTATCACCTAAGAGGGATCACCATGAGAACCATTCAACCCATCTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAACGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACAATGCGAAGCAGCCAAACATGGCCTTATTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAAGTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGCCGAACTCGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACATGCCACGCTTGCAAACAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTTGAAAACGATAATGCAAAAGATCACGCCAAAGACAACTAA 1398 0.4764 MLANNLSPSSVPTSEPFPCTENATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRIIIPKPTEAPTIFMNNPTAAITTAETSSKNNNKLHPNLDLQLSTPTTTTNNNNSSNVANPIDALISTSLSPKRDHHENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNAKQPNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIEVAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNAKDHAKDN* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01875 465 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Phac4g01875 465 MobiDBLite consensus disorder prediction 194 220 - -
Phac4g01875 465 MobiDBLite consensus disorder prediction 249 282 - -
Phac4g01875 465 Gene3D Classic Zinc Finger 119 195 - -
Phac4g01875 465 MobiDBLite consensus disorder prediction 1 44 - -
Phac4g01875 465 MobiDBLite consensus disorder prediction 305 339 - -
Phac4g01875 465 Gene3D Classic Zinc Finger 35 97 - -
Phac4g01875 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 409 IPR031140 -
Phac4g01875 465 MobiDBLite consensus disorder prediction 1 24 - -
Phac4g01875 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Phac4g01875 465 MobiDBLite consensus disorder prediction 193 222 - -
Phac4g01875 465 MobiDBLite consensus disorder prediction 294 339 - -
Phac4g01875 465 SMART c2h2final6 134 161 IPR013087 -
Phac4g01875 465 SMART c2h2final6 98 128 IPR013087 -
Phac4g01875 465 SMART c2h2final6 57 79 IPR013087 -
Phac4g01875 465 Coils Coil 353 408 - -
Phac4g01875 465 FunFam protein indeterminate-domain 12-like 36 104 - -
Phac4g01875 465 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Phac4g01875 465 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01875 Phac-Chr4 45872421 45875613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01875 20 455 C2H2 Transcription Factor Family AT2G01940 56.473 1.25e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac4g01875 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01875 K25871 - gmx:100800187 816.224