Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01857 ATGAATGCTTCAATGAGGAAAAAGGTTCAAAGGAATTGTAAGATAAGAGGCTACAATCTCAAAGTCGATGCTCTCGACGAGATCCTCTCCTTCGCCTCTCGCTTCGAAGGCAACGAAGAAGAAGCCATCGATCTCCTCCTCGACAAGCTCGACGAGCTCGAAAATTCTCTGAAATCCACCATAATCGACAAGGACACGGTGAACCGCGCGGTGAGCCTGCTACTGGAAGTTGTGGAGGATAGCTCCGATCCCGGCGACAGCACCGGAATCTCTTCTGCCTTTCGCGTTATCGATGCGTTCCACGTCCCGAAGTTTAAATACGACAATATCAGAAAGCAGTTCTATGAGCATACAGGCACCTTGTCTATTCACGGAGAAGCATCAGGTAAAGCAGCTTTGTACAGGGATAGGTTTCTATTATTGTCCCAGAGGCTCTCTCGTGACCAGCATTTTTCCAAACCTGCTTTTGAATCTGAATTTTCTCATTTCGGGAGTTGTGAGATATCTCCTATTCAATCTCTGGTTGGGCAAACAGGTAGAAGATGGGTGATGGGCGTAATATCTCAGCTGGAAGATGGTCATTACTATTTGGAAGACCTTACAGCTGCAGTTAAAATTAACTTGTCCAATGCAAAGATAACTACAGGACTCTTTTCAGAGAACACTATAGTTGTGGTCGAAGGGGAGATGCTTCTGGAGGGTATTTTTCAGGTCTTAACATGTGGATTTCCTCCATTGGAGGATAGAAATAAGTCACTGAAAGTACTTTCAGGGCATGACTTTTTTGGTGGTGGTACTCTTACAAAAGAGGAAACTATTAGACTGGAAGAGATGGAGAAAAGAGCAGTAAATGACATGTTTGTCATACTTTCTGATGTTTGGCTAGACAAAGAAGAGGCTTTGACAAAGGTAGAGACTATTCTGGATGGTTTTGAGAGTGTGGAAGTGGTTCCTTCCTTATTTGTTTTCATGGGAAACTTCTGTTCTAGGCCATGTAACCTTTCATTTCATTCTTATTCGAGCCTCAGAATGCAATTTGGTAAGCTGGGGGAAATGATTGCCGCCCATACACGGCTGAAAGAGCAGAGTCGATTTCTTTTTATTCCAGGTCCTGATGATGCAGGTCCTTCTACAGTTCTTCCTAGGTGCGCTTTACCAAAATATTTAACTGATGAGCTCCAAAAGCACATACCCAATGCCATATTTTCAAGCAACCCTTGCAGGGTCAAATTTTATACCCAAGAAATTGTATTTTTCCGCCAGGATATGCTGCATAGAATGCGTCGCTCATGTTTGATGTCTCCTTCTATAGAAGAAACCGATGATCATTTTCAACATCTTGTTGCTACCATAACCCATCAAAGTCATCTCTGTCCACTACCCCTAACCGTTCAACCTATCATTTGGAATTATGACCATTCTCTTTATCTTTATCCAACTCCACACACGGTATTGCTCATATTTGAATTTTTGTTGTGGCAAAAGATATTTAAATCATGTTAA 1503 0.4238 MNASMRKKVQRNCKIRGYNLKVDALDEILSFASRFEGNEEEAIDLLLDKLDELENSLKSTIIDKDTVNRAVSLLLEVVEDSSDPGDSTGISSAFRVIDAFHVPKFKYDNIRKQFYEHTGTLSIHGEASGKAALYRDRFLLLSQRLSRDQHFSKPAFESEFSHFGSCEISPIQSLVGQTGRRWVMGVISQLEDGHYYLEDLTAAVKINLSNAKITTGLFSENTIVVVEGEMLLEGIFQVLTCGFPPLEDRNKSLKVLSGHDFFGGGTLTKEETIRLEEMEKRAVNDMFVILSDVWLDKEEALTKVETILDGFESVEVVPSLFVFMGNFCSRPCNLSFHSYSSLRMQFGKLGEMIAAHTRLKEQSRFLFIPGPDDAGPSTVLPRCALPKYLTDELQKHIPNAIFSSNPCRVKFYTQEIVFFRQDMLHRMRRSCLMSPSIEETDDHFQHLVATITHQSHLCPLPLTVQPIIWNYDHSLYLYPTPHTVLLIFEFLLWQKIFKSC* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01857 500 PIRSF DNA_pol_epsilon_2 1 500 IPR016266 GO:0003677|GO:0006261|GO:0008622
Phac4g01857 500 Coils Coil 36 63 - -
Phac4g01857 500 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 486 IPR016266 GO:0003677|GO:0006261|GO:0008622
Phac4g01857 500 Pfam DNA polymerase alpha/epsilon subunit B 287 486 IPR007185 GO:0003677|GO:0006260
Phac4g01857 500 Gene3D - 2 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01857 Phac-Chr4 45717319 45723963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac4g01857 16 486 Core DNA Replication Machinery Family AT5G22110 70.127 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01857 K02325 - gmx:100784116 808.52