Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac4g01844 ATGGAGATGCAGGATCAAATAGAAAGCACTAGATCAACCATATCTGGCTCAGCTAGTTACTGCCATTCAAATGGTGGAAAACAATCTGAAACTGTTGCTTCTGTTGGAAACAGCCACACTCCCAAGGTGAGGAAACCATACACCATTACTAAACAGAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTAGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTTTCTAAGGTTGTTAGGGAATCTGAGGGAAGTGCTGAGAGTTCTGTACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCATCCATATCCCCGTAAATCAGTTGATGCTTTCAAAGGACACACCACACCTAATGAAACAGAAACATCTCAATCCATGAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCGACTTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAGAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCTAACCCAAACGTCTGCATGAAGCCCGAGTTTAGTTCCAAGGAAACCCAATATGTTATAGAAGATTCTACCAATATGCCACAAACCACTAGTATTAAGCTTTTCGGAAGAACAGTCTCTATGATAGATAATCAGAAGTTGCAGAACATAGATGATAATGGTAAGGCAATAACTGTGAAGTCTGATGAAGTGGATGATGTTGAGAATGAGAAGCCTGGCCAATCAACCGAGCAAGTAGATACACAATTATCTCTAGCCTTGGTTGGTGGCAACTGTCTCATAACACCTGATTCTGAGGGAGCTGACCGCAGGGAAGAGCCACCGAAGGAGAACATGTGCCTCAGTGAATGTGCACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTTCCAGCTTTCTGCGTCAGTCCATGCAATCAGATCCTAAATCCCATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATCAGTTTGTGACATGGATAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAATGTCAAAAATATCAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAAAGGGTTTGTTCCATATAAAAGATGTTTAGCTGAAAGAGAAGGAAATTCATTAATTGCGGCCATGGAAGAGAGGGATGGGCAACGAGCTCGTGTGTGCTCATAG 1419 0.439 MEMQDQIESTRSTISGSASYCHSNGGKQSETVASVGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSVQPINIPPPRPKRKPLHPYPRKSVDAFKGHTTPNETETSQSMNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSNPNVCMKPEFSSKETQYVIEDSTNMPQTTSIKLFGRTVSMIDNQKLQNIDDNGKAITVKSDEVDDVENEKPGQSTEQVDTQLSLALVGGNCLITPDSEGADRREEPPKENMCLSECAPDASFPQWSLYQGLPAFCVSPCNQILNPMPLRPSLKVRAREEESCCTGSNTESVCDMDNQGKNSDAVDSKCQKYQGEGAAPQKPAKGFVPYKRCLAEREGNSLIAAMEERDGQRARVCS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac4g01844 472 PANTHER SWI/SNF COMPLEX-RELATED 23 303 - -
Phac4g01844 472 MobiDBLite consensus disorder prediction 206 232 - -
Phac4g01844 472 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Phac4g01844 472 SUPERFAMILY Homeodomain-like 47 101 IPR009057 -
Phac4g01844 472 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 100 IPR006447 GO:0003677
Phac4g01844 472 CDD SANT 55 98 IPR001005 -
Phac4g01844 472 ProSiteProfiles SANT domain profile. 51 102 IPR017884 -
Phac4g01844 472 SMART sant 52 100 IPR001005 -
Phac4g01844 472 MobiDBLite consensus disorder prediction 1 43 - -
Phac4g01844 472 FunFam protein REVEILLE 6 isoform X1 55 103 - -
Phac4g01844 472 MobiDBLite consensus disorder prediction 104 152 - -
Phac4g01844 472 Pfam Myb-like DNA-binding domain 53 96 IPR001005 -
Phac4g01844 472 Gene3D - 55 102 - -
Phac4g01844 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 102 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac4g01844 Phac-Chr4 45537394 45542138 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phac4g01844 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac4g01844 - - vum:124836796 851.277